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ResiduePairJump.hh File Reference

a class to create jump transform from a pair of residues More...

#include <protocols/jumping/ResiduePairJump.fwd.hh>
#include <core/types.hh>
#include <core/chemical/ResidueType.fwd.hh>
#include <core/fragment/Frame.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/kinematics/Jump.hh>
#include <utility/VirtualBase.hh>
#include <string>
#include <map>
#include <core/pack/rotamer_set/RotamerSet.fwd.hh>
#include <utility/vector1.hh>


class  protocols::jumping::ResiduePairJumpSingle
 a single residue component of a ResiduePairJump class More...
class  protocols::jumping::ResiduePairJump


 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.


enum  protocols::jumping::cstType {
  protocols::jumping::disAB = 1, protocols::jumping::angleA, protocols::jumping::angleB, protocols::jumping::dihedralA,
  protocols::jumping::dihedralAB, protocols::jumping::dihedralB, protocols::jumping::num_cstType = dihedralB
enum  protocols::jumping::dofType { protocols::jumping::rot1 = 1, protocols::jumping::rot2, protocols::jumping::cstJump, protocols::jumping::num_dofType = cstJump }

Detailed Description

a class to create jump transform from a pair of residues

This class is to create possible jump transforms between a pair of residues when their sidechains are locked in certain geometry constraints. It starts from the predefined constraints and takes backbone-independent rotamer conformation into account and reversely generate their backbone positions. Then a jump transform is measured.

Chu Wang