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core::pack::guidance_scoreterms::hbnet_energy::HBNetEnergy Member List

This is the complete list of members for core::pack::guidance_scoreterms::hbnet_energy::HBNetEnergy, including all inherited members.

atomic_interaction_cutoff() constcore::scoring::methods::WholeStructureEnergyinlinevirtual
atomistic_energy(core::Size atmno, conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &scorefxn, EnergyMap &emap) constcore::scoring::methods::EnergyMethodvirtual
atomistic_pair_energy(core::Size atmno1, conformation::Residue const &rsd1, core::Size atomno2, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &scorefxn, EnergyMap &emap) constcore::scoring::methods::EnergyMethodvirtual
bb_hbonds_graph_core::pack::guidance_scoreterms::hbnet_energy::HBNetEnergymutableprivate
bonus_function(core::Size count_in) constcore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyprivate
calculate_energy(utility::vector1< core::conformation::ResidueCOP > const &resvect, utility::vector1< core::Size > const &rotamer_ids, core::Size const substitution_position=0) const overridecore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyvirtual
clean_up_residuearrayannealableenergy_after_packing(core::pose::Pose &pose)core::scoring::annealing::ResidueArrayAnnealableEnergyvirtual
clone() const overridecore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyvirtual
commit_considered_substitution() overridecore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyvirtual
defines_high_order_terms(pose::Pose const &) constcore::scoring::methods::EnergyMethodvirtual
disabled_core::pack::guidance_scoreterms::hbnet_energy::HBNetEnergymutableprivate
drop_all_edges_for_symmetric_nodes(core::Size const asymm_node) constcore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyprivate
EnergyMethod(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethod
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) constcore::scoring::methods::EnergyMethodvirtual
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) constcore::scoring::methods::EnergyMethodvirtual
finalize_after_minimizing(core::pose::Pose &pose) const overridecore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyvirtual
finalize_total_energy(core::pose::Pose &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &totals) const overridecore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyvirtual
has_atomistic_energies() constcore::scoring::methods::EnergyMethodvirtual
has_atomistic_pairwise_energies() constcore::scoring::methods::EnergyMethodvirtual
has_bb_hbond(core::conformation::Residue const &res1, core::conformation::Residue const &res2) constcore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyprivate
has_bb_hbond_connection(core::pose::Pose const &pose, core::conformation::Residue const &res1, core::conformation::Residue const &res2) constcore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyprivate
has_hbond(core::conformation::Residue const &res1, core::conformation::Residue const &res2, core::Size const res1_index, core::Size const res2_index) constcore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyprivate
hbnet_energy_ramping_enum_from_string(std::string const &ramping_string) constcore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergy
hbnet_energy_ramping_string_from_enum(HBNetEnergyRamping const ramping_enum) constcore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergy
HBNetEnergy(core::scoring::methods::EnergyMethodOptions const &options)core::pack::guidance_scoreterms::hbnet_energy::HBNetEnergy
hbonds_graph_core::pack::guidance_scoreterms::hbnet_energy::HBNetEnergymutableprivate
hbonds_graph_last_accepted_core::pack::guidance_scoreterms::hbnet_energy::HBNetEnergymutableprivate
indicate_required_context_graphs(utility::vector1< bool > &context_graphs_required) const overridecore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyvirtual
initialize_bb_hbonds_graph(core::pose::Pose const &pose) constcore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyprivate
initialize_graphs(core::pose::Pose const &pose) constcore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyprivate
max_network_size() constcore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyinline
max_network_size(core::Size const setting)core::pack::guidance_scoreterms::hbnet_energy::HBNetEnergy
max_network_size_core::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyprivate
method_type() const overridecore::scoring::methods::WholeStructureEnergyvirtual
minimize_in_whole_structure_context(pose::Pose const &) constcore::scoring::methods::EnergyMethodvirtual
neighbour_graph_core::pack::guidance_scoreterms::hbnet_energy::HBNetEnergymutableprivate
parent typedefcore::scoring::methods::WholeStructureEnergy
parent1 typedefcore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergy
parent2 typedefcore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergy
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) constcore::scoring::methods::EnergyMethodvirtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) const overridecore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyvirtual
ramping_type_core::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyprivate
report() constcore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergy
requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) constcore::scoring::methods::EnergyMethodvirtual
ResidueArrayAnnealableEnergy()core::scoring::annealing::ResidueArrayAnnealableEnergy
ResidueArrayAnnealableEnergy(ResidueArrayAnnealableEnergy const &src)core::scoring::annealing::ResidueArrayAnnealableEnergy
score_types() constcore::scoring::methods::EnergyMethodinline
score_types_core::scoring::methods::EnergyMethodprivate
set_hbnet_energy_ramping(std::string const &ramping_string)core::pack::guidance_scoreterms::hbnet_energy::HBNetEnergy
set_hbnet_energy_ramping(HBNetEnergyRamping const ramping_enum)core::pack::guidance_scoreterms::hbnet_energy::HBNetEnergy
set_score_types(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethodprotected
set_up_residuearrayannealableenergy_for_packing(core::pose::Pose &pose, core::pack::rotamer_set::RotamerSets const &rotamersets, core::scoring::ScoreFunction const &sfxn) overridecore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyvirtual
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) constcore::scoring::methods::EnergyMethodvirtual
setup_for_minimizing(core::pose::Pose &pose, core::scoring::ScoreFunction const &sfxn, core::kinematics::MinimizerMapBase const &minmap) const overridecore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyvirtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) constcore::scoring::methods::EnergyMethodvirtual
setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) constcore::scoring::methods::EnergyMethodvirtual
setup_for_scoring(pose::Pose &, ScoreFunction const &) constcore::scoring::methods::EnergyMethodvirtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) constcore::scoring::methods::EnergyMethodvirtual
show_additional_info(std::ostream &, pose::Pose &, bool) constcore::scoring::methods::EnergyMethodvirtual
symm_info_core::pack::guidance_scoreterms::hbnet_energy::HBNetEnergymutableprivate
symmetrize_hbonds_graph(core::Size const node1, core::Size const node2, utility::vector1< core::conformation::ResidueCOP > const &resvect) constcore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyprivate
update_residue_for_packing(pose::Pose &, Size resid) constcore::scoring::methods::EnergyMethodvirtual
version() const overridecore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergyvirtual
WholeStructureEnergy(EnergyMethodCreatorOP)core::scoring::methods::WholeStructureEnergy
~HBNetEnergy() overridecore::pack::guidance_scoreterms::hbnet_energy::HBNetEnergy
~ResidueArrayAnnealableEnergy()core::scoring::annealing::ResidueArrayAnnealableEnergyvirtual
~WholeStructureEnergy() overridecore::scoring::methods::WholeStructureEnergyinline