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MHCEpitopePredictorSVM.hh File Reference

Wraps NmerSVM into the mhc_epitope_energy scoreterm framework. More...

#include <core/scoring/mhc_epitope_energy/MHCEpitopePredictor.hh>
#include <core/scoring/mhc_epitope_energy/MHCEpitopePredictorSVM.fwd.hh>
#include <core/scoring/nmer/NMerSVMEnergy.fwd.hh>

Classes

class  core::scoring::mhc_epitope_energy::MHCEpitopePredictorSVM
 

Namespaces

 core
 A class for reading in the atom type properties.
 
 core::scoring
 
 core::scoring::mhc_epitope_energy
 

Detailed Description

Wraps NmerSVM into the mhc_epitope_energy scoreterm framework.

Just a simple layer over Indigo King's NmerSVM, to meet the MHCEpitopePredictor interface, so can be used within mhc_epitope scoreterm machinery. Note that in the expected usage here, Nmer takes a 15mer, consisting of a core 9mer plus fixed-length 3mer overhangs on both N- and C- termini. The MHCEpitopeEnergy constructs and pads the peptide appropriately.

Author
Chris Bailey-Kellogg, cbk@c.nosp@m.s.da.nosp@m.rtmou.nosp@m.th.e.nosp@m.du; Brahm Yachnin, brahm.nosp@m..yac.nosp@m.hnin@.nosp@m.rutg.nosp@m.ers.e.nosp@m.du