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SapConstraintHelper.cc File Reference

Score term that applies the RotamerPSSMConstraint as an energy. More...

#include <core/pack/guidance_scoreterms/sap/SapConstraintHelper.hh>
#include <core/pack/guidance_scoreterms/sap/SapConstraintOptions.hh>
#include <core/pack/guidance_scoreterms/sap/util.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.tmpl.hh>
#include <core/pose/symmetry/util.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/DerivVectorPair.hh>
#include <core/scoring/EnergyMap.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/etable/EtableOptions.hh>
#include <core/scoring/sasa.hh>
#include <core/conformation/util.hh>
#include <core/pack/packer_neighbors.hh>
#include <core/pack/rotamer_set/RotamerSet.hh>
#include <core/pack/rotamer_set/RotamerSet_.hh>
#include <core/pack/rotamer_set/symmetry/SymmetricRotamerSet_.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/OperateOnResidueSubset.hh>
#include <core/pack/task/operation/ResLvlTaskOperations.hh>
#include <core/select/residue_selector/ResidueIndexSelector.hh>
#include <core/select/util.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/database/open.hh>
#include <numeric/conversions.hh>
#include <utility/vector1.hh>
#include <utility/pointer/memory.hh>
#include <utility/graph/Graph.hh>
#include <utility/io/izstream.hh>
#include <boost/format.hpp>

Namespaces

 core
 A class for reading in the atom type properties.
 
 core::pack
 
 core::pack::guidance_scoreterms
 
 core::pack::guidance_scoreterms::sap
 

Functions

static basic::Tracer TR ("core.pack.guidance_scoreterms.sap.SapConstraintHelper")
 
void core::pack::guidance_scoreterms::sap::find_mismatch (select::residue_selector::ResidueSubset const &small_sub, select::residue_selector::ResidueSubset const &big_sub, std::string const &small_name, std::string const &big_name)
 
Size core::pack::guidance_scoreterms::sap::upper_triangle_offset (Size y, Size x, Size size)
 

Detailed Description

Score term that applies the RotamerPSSMConstraint as an energy.

Author
Brian Coventry (bcov@.nosp@m.uw.e.nosp@m.du)

Function Documentation

static basic::Tracer TR ( "core.pack.guidance_scoreterms.sap.SapConstraintHelper"  )
static