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protocols::hotspot_hashing::HotspotStubSet Member List

This is the complete list of members for protocols::hotspot_hashing::HotspotStubSet, including all inherited members.

add_hotspot_constraints_to_pose(core::pose::Pose &pose, core::Size const partner, HotspotStubSetOP hotspot_stub_set, core::Real const &CB_force_constant, core::Real const &worst_allowed_stub_bonus, bool const apply_self_energies, core::Real const &bump_cutoff, bool const apply_ambiguous_constraints=false)protocols::hotspot_hashing::HotspotStubSet
add_hotspot_constraints_to_pose(core::pose::Pose &pose, core::id::AtomID const &fixed_atom, core::pack::task::PackerTaskCOP const packer_task, HotspotStubSetOP hotspot_stub_set, core::Real const &CB_force_constant, core::Real const &worst_allowed_stub_bonus, bool const apply_self_energies, core::Real const &bump_cutoff, bool const apply_ambiguous_constraints=false)protocols::hotspot_hashing::HotspotStubSet
add_hotspot_constraints_to_wholepose(core::pose::Pose &pose, core::Size const partner, HotspotStubSetOP hotspot_stub_set, core::Real const &CB_force_constant, core::Real const &worst_allowed_stub_bonus, bool const apply_self_energies, core::Real const &bump_cutoff, bool const apply_ambiguous_constraints=false)protocols::hotspot_hashing::HotspotStubSet
add_hotspot_constraints_to_wholepose(core::pose::Pose &pose, core::id::AtomID const &fixed_atom, core::pack::task::PackerTaskCOP const packer_task, HotspotStubSetOP hotspot_stub_set, core::Real const &CB_force_constant, core::Real const &worst_allowed_stub_bonus, bool const apply_self_energies, core::Real const &bump_cutoff, bool const apply_ambiguous_constraints=false)protocols::hotspot_hashing::HotspotStubSet
add_stub_(HotspotStubCOP stub)protocols::hotspot_hashing::HotspotStubSet
add_stub_set(HotspotStubSet const &stubset)protocols::hotspot_hashing::HotspotStubSet
autofill(core::pose::Pose const &pose, core::scoring::ScoreFunctionCOP scorefxn, core::Size const n_stubs)protocols::hotspot_hashing::HotspotStubSet
autofill(core::pose::Pose const &pose, core::scoring::ScoreFunctionCOP scorefxn, core::Size const target, core::Real const distance, core::Size const n_stubs)protocols::hotspot_hashing::HotspotStubSet
begin() const protocols::hotspot_hashing::HotspotStubSetinline
begin()protocols::hotspot_hashing::HotspotStubSetinline
chain_to_design_protocols::hotspot_hashing::HotspotStubSetprivate
clear()protocols::hotspot_hashing::HotspotStubSet
cluster()protocols::hotspot_hashing::HotspotStubSet
colonyE()protocols::hotspot_hashing::HotspotStubSet
const_iterator typedefprotocols::hotspot_hashing::HotspotStubSet
constraints() const protocols::hotspot_hashing::HotspotStubSet
constraints_protocols::hotspot_hashing::HotspotStubSetprivate
create_hotspot_after_pose(core::pose::Pose &pose, std::string const &resname)protocols::hotspot_hashing::HotspotStubSetprivate
end() const protocols::hotspot_hashing::HotspotStubSetinline
end()protocols::hotspot_hashing::HotspotStubSetinline
evaluate_stub_bumps_(core::conformation::Residue const &placed_stub_residue, core::pose::Pose const &unbound_pose, core::Size const resnum, core::scoring::TenANeighborGraph const &unbound_neighbor_graph, core::scoring::ScoreFunctionCOP const &bump_scorefxn, core::Real const &max_bump_energy)protocols::hotspot_hashing::HotspotStubSetprivate
evaluate_stub_self_energy_(core::conformation::Residue const &stub_residue, core::pose::Pose const &unbound_pose, core::Size const resnum, core::scoring::TenANeighborGraph const &unbound_neighbor_graph, core::scoring::ScoreFunctionCOP const &full_scorefxn)protocols::hotspot_hashing::HotspotStubSetprivate
fill(core::pose::Pose const &reference_pose, core::scoring::ScoreFunctionCOP scorefxn_in, std::string const &residue_name3, core::Size const n_stubs)protocols::hotspot_hashing::HotspotStubSet
fill(core::pose::Pose const &reference_pose, core::scoring::ScoreFunctionCOP scorefxn_in, core::Size const target, core::Real const distance, std::string const &residue_name3, core::Size const n_stubs)protocols::hotspot_hashing::HotspotStubSet
filter(protocols::filters::FilterCOP filter)protocols::hotspot_hashing::HotspotStubSet
filter_protocols::hotspot_hashing::HotspotStubSetprivate
find_neighboring_stubs(HotspotStubCOP stub) const protocols::hotspot_hashing::HotspotStubSet
generate_unbound_pose_(core::pose::Pose &pose)protocols::hotspot_hashing::HotspotStubSetprivate
get_best_energy_stub() const protocols::hotspot_hashing::HotspotStubSet
get_nearest_stub(core::conformation::ResidueCOP stub) const protocols::hotspot_hashing::HotspotStubSet
get_residue_score_(core::pose::Pose const &pose, core::scoring::ScoreFunctionCOP scorefxn, core::Size const seqpos)protocols::hotspot_hashing::HotspotStubSetprivate
get_stub(std::string const &residue_name3, core::Real const score) const protocols::hotspot_hashing::HotspotStubSet
handshake_stub_sets(void)protocols::hotspot_hashing::HotspotStubSetprivate
hotspot_length() const protocols::hotspot_hashing::HotspotStubSet
hotspot_length(core::Size const length)protocols::hotspot_hashing::HotspotStubSet
hotspot_length_protocols::hotspot_hashing::HotspotStubSetprivate
Hotspots typedefprotocols::hotspot_hashing::HotspotStubSet
HotspotStub classprotocols::hotspot_hashing::HotspotStubSetfriend
HotspotStubSet()protocols::hotspot_hashing::HotspotStubSet
HotspotStubSet(HotspotStubSet const &init)protocols::hotspot_hashing::HotspotStubSet
HotspotStubSet(HotspotStubSet &&)=defaultprotocols::hotspot_hashing::HotspotStubSet
Hs_data typedefprotocols::hotspot_hashing::HotspotStubSet
Hs_map typedefprotocols::hotspot_hashing::HotspotStubSet
Hs_vec typedefprotocols::hotspot_hashing::HotspotStubSet
iterator typedefprotocols::hotspot_hashing::HotspotStubSet
operator=(HotspotStubSet &&)=defaultprotocols::hotspot_hashing::HotspotStubSet
operator=(HotspotStubSet const &rhs)protocols::hotspot_hashing::HotspotStubSetinline
pair_with_scaffold(core::pose::Pose const &pose, core::Size const partner, protocols::filters::FilterCOP filter)protocols::hotspot_hashing::HotspotStubSet
pose_protocols::hotspot_hashing::HotspotStubSetprivate
prepare_hashing_packer_task_(core::pose::Pose const &pose, core::Size const chain_to_redesign=2)protocols::hotspot_hashing::HotspotStubSet
random_stub()protocols::hotspot_hashing::HotspotStubSet
random_stub(std::string const &resname)protocols::hotspot_hashing::HotspotStubSet
read_data(std::string const &filename)protocols::hotspot_hashing::HotspotStubSet
remove_all_hotspot_constraints(core::pose::Pose &pose) const protocols::hotspot_hashing::HotspotStubSet
remove_random_stubs_from_set(int const num_to_remove)protocols::hotspot_hashing::HotspotStubSet
remove_stub(HotspotStubCOP stub)protocols::hotspot_hashing::HotspotStubSet
remove_stubs_from_set(std::set< std::pair< std::string, core::Real > > const &)protocols::hotspot_hashing::HotspotStubSet
rescore(core::pose::Pose const &pose, core::scoring::ScoreFunctionCOP scorefxn)protocols::hotspot_hashing::HotspotStubSet
retrieve(std::string const &residue_name3)protocols::hotspot_hashing::HotspotStubSet
sc_only() const protocols::hotspot_hashing::HotspotStubSet
sc_only(bool sc_switch)protocols::hotspot_hashing::HotspotStubSet
sc_only_protocols::hotspot_hashing::HotspotStubSetprivate
score_threshold(core::Real const threshold)protocols::hotspot_hashing::HotspotStubSet
score_threshold_protocols::hotspot_hashing::HotspotStubSetprivate
set_chain_to_design(core::Size const chain_to_design=2)protocols::hotspot_hashing::HotspotStubSet
setup_hotspot_foldtree_(core::pose::Pose &pose)protocols::hotspot_hashing::HotspotStubSetprivate
size() const protocols::hotspot_hashing::HotspotStubSet
size(std::string const &resname)protocols::hotspot_hashing::HotspotStubSet
stub_offset()protocols::hotspot_hashing::HotspotStubSetprivate
stub_set_protocols::hotspot_hashing::HotspotStubSetprivate
stub_set_vec_protocols::hotspot_hashing::HotspotStubSetprivate
subset(std::string const &residue_name3, core::Real const scorecut)protocols::hotspot_hashing::HotspotStubSet
subset(core::Real const scorecut) const protocols::hotspot_hashing::HotspotStubSet
target_distance_protocols::hotspot_hashing::HotspotStubSetprivate
target_resnum_protocols::hotspot_hashing::HotspotStubSetprivate
write_all(std::string const &filename) const protocols::hotspot_hashing::HotspotStubSet
write_stub(utility::io::ozstream &outstream, HotspotStubCOP stub, std::string const &tag) const protocols::hotspot_hashing::HotspotStubSet
~HotspotStubSet() overrideprotocols::hotspot_hashing::HotspotStubSet