simply takes a list of pdbs and creates relative pose then extract sigmoids and call operator (product) More...

#include <MultipleSigmoidsFilter.hh>

Inheritance diagram for protocols::calc_taskop_filters::MultipleSigmoids:

Public Member Functions
	MultipleSigmoids ()

	~MultipleSigmoids () override

filters::FilterOP	clone () const override

filters::FilterOP	fresh_instance () const override

bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...

void	report (std::ostream &out, core::pose::Pose const &pose) const override

core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...

core::Real	compute (core::pose::Pose const &pose) const

core::Real	threshold () const

void	threshold (core::Real const t)

OperatorOP	operator_filter () const

void	operator_filter (OperatorOP opt)

SigmoidOP	sigmoid_filter () const

RelativePoseFilterOP	relative_pose_filter () const

void	relative_pose_filter (RelativePoseFilterOP rpose)

void	reset_baseline (core::pose::Pose const &pose, bool const attempt_read_from_checkpoint)

std::string	name () const override
	allows within-trajectory resetting of the baseline. Notice this is nonconst, so can't be called from apply. attempt_read_from_checkpoint should be true for MC trials > 1, but false otherwise More...

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	~Filter () override

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
std::string	file_names_

core::Real	threshold_

RelativePoseFilterOP	r_pose_

SigmoidOP	sig_

OperatorOP	operatorF_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

simply takes a list of pdbs and creates relative pose then extract sigmoids and call operator (product)

Constructor & Destructor Documentation

◆ MultipleSigmoids()

protocols::calc_taskop_filters::MultipleSigmoids::MultipleSigmoids ( )

◆ ~MultipleSigmoids()

protocols::calc_taskop_filters::MultipleSigmoids::~MultipleSigmoids ( )

overridedefault

Member Function Documentation

◆ apply()

bool protocols::calc_taskop_filters::MultipleSigmoids::apply ( core::pose::Pose const & pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), threshold(), and protocols::hybridization::val.

◆ class_name()

std::string protocols::calc_taskop_filters::MultipleSigmoids::class_name ( )

static

Referenced by protocols::calc_taskop_filters::MultipleSigmoidsFilterCreator::keyname(), name(), and provide_xml_schema().

◆ clone()

protocols::filters::FilterOP protocols::calc_taskop_filters::MultipleSigmoids::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

◆ compute()

core::Real protocols::calc_taskop_filters::MultipleSigmoids::compute ( core::pose::Pose const & pose ) const

References operatorF_, protocols::calc_taskop_filters::TR(), and protocols::hybridization::val.

Referenced by apply(), report(), and report_sm().

◆ fresh_instance()

protocols::filters::FilterOP protocols::calc_taskop_filters::MultipleSigmoids::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

◆ name()

std::string protocols::calc_taskop_filters::MultipleSigmoids::name ( ) const

overridevirtual

allows within-trajectory resetting of the baseline. Notice this is nonconst, so can't be called from apply. attempt_read_from_checkpoint should be true for MC trials > 1, but false otherwise

Reimplemented from protocols::filters::Filter.

References class_name().