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BackboneTorsionPerturbation.cc File Reference
#include <protocols/hybridization/BackboneTorsionPerturbation.hh>
#include <protocols/hybridization/BackboneTorsionPerturbationCreator.hh>
#include <protocols/moves/Mover.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/VariantType.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/conformation/Residue.hh>
#include <core/import_pose/import_pose.hh>
#include <core/sequence/util.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/CartesianMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <protocols/hybridization/util.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/scoring/Ramachandran.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <core/scoring/func/ScalarWeightedFunc.hh>
#include <core/scoring/func/USOGFunc.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <ObjexxFCL/format.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/random/random.hh>
#include <utility/tag/Tag.hh>
#include <basic/Tracer.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::hybridization
 

Functions

static basic::Tracer TR ("protocols.hybridization.BackboneTorsionPerturbation")
 
void protocols::hybridization::add_constraints (core::pose::Pose &pose, core::Size rsd1, core::Size rsd2)
 
void protocols::hybridization::optimize (core::pose::Pose &pose, core::Size rsd1, core::Size rsd2, core::scoring::ScoreFunctionOP scorefxn, core::Size ncycles, core::Real max_delta_torsion)
 
void protocols::hybridization::pick_pivots (core::pose::Pose &pose, core::Size &rsd1, core::Size &torsion1, core::Size &rsd2, core::Size &torsion2, core::Size variance=5)
 

Detailed Description

Author
Yifan Song

Function Documentation

static basic::Tracer TR ( "protocols.hybridization.BackboneTorsionPerturbation"  )
static