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RNAThreadAndMinimizeMover.cc File Reference

Thread a new sequence over a given RNA scaffold and do a little optimization. More...

#include <protocols/rna/movers/RNAThreadAndMinimizeMover.hh>
#include <protocols/rna/movers/RNAThreadAndMinimizeMoverCreator.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/id/AtomID_Map.hh>
#include <core/id/AtomID.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/AtomTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/Jump.hh>
#include <core/kinematics/tree/Atom.hh>
#include <core/io/NomenclatureManager.hh>
#include <core/pose/rna/util.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/util.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/conformation/ResidueFactory.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/stepwise/sampler/rna/RNA_KIC_Sampler.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <utility>
#include <utility/io/ozstream.hh>
#include <utility/io/izstream.hh>
#include <utility/tag/Tag.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <numeric/random/random.hh>
#include <iostream>
#include <fstream>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::rna
 
 protocols::rna::movers
 

Functions

static basic::Tracer TR ("protocols.rna.movers.RNAThreadAndMinimizeMover")
 
std::ostream & protocols::rna::movers::operator<< (std::ostream &os, RNAThreadAndMinimizeMover const &mover)
 

Detailed Description

Thread a new sequence over a given RNA scaffold and do a little optimization.

Author
Andy Watkins (amw57.nosp@m.9@ny.nosp@m.u.edu)

Function Documentation

static basic::Tracer TR ( "protocols.rna.movers.RNAThreadAndMinimizeMover"  )
static