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protocols::simple_filters::PackStatFilter Class Reference

#include <PackStatFilter.hh>

Inheritance diagram for protocols::simple_filters::PackStatFilter:
Inheritance graph
[legend]

Public Types

typedef protocols::filters::Filter Super
 
typedef protocols::filters::Filter Filter
 
typedef
protocols::filters::FilterOP 
FilterOP
 
typedef core::Real Real
 
typedef core::pose::Pose Pose
 
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 

Public Member Functions

 PackStatFilter ()
 default constructor More...
 
 PackStatFilter (Real const &ss)
 constructor with arguments More...
 
 PackStatFilter (PackStatFilter const &rval)
 copy constructor More...
 
 ~PackStatFilter () override=default
 
filters::FilterOP clone () const override
 make clone More...
 
filters::FilterOP fresh_instance () const override
 make fresh instance More...
 
void filtered_score (Real const &ss)
 set filtered secondary structure More...
 
void parse_my_tag (TagCOP tag, basic::datacache::DataMap &) override
 get name of this filter More...
 
bool apply (Pose const &pose) const override
 returns true if the given pose passes the filter, false otherwise. In this case, the test is whether the give pose is the topology we want. More...
 
Real report_sm (Pose const &pose) const override
 used to report filter internals through a score or silent file More...
 
Real compute (Pose const &pose) const
 calc packstat score More...
 
std::string name () const override
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
 ~Filter () override
 
virtual void report (std::ostream &, core::pose::Pose const &) const
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Public Attributes

core::Size chain_
 determine which chain to evaluate, 0 is all More...
 
core::Size repeats_
 how many times to repeat evaluation More...
 

Private Attributes

Real filtered_score_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

typedef basic::datacache::DataMap protocols::simple_filters::PackStatFilter::DataMap

Constructor & Destructor Documentation

protocols::simple_filters::PackStatFilter::PackStatFilter ( )

default constructor

protocols::simple_filters::PackStatFilter::PackStatFilter ( Real const &  ss)

constructor with arguments

protocols::simple_filters::PackStatFilter::PackStatFilter ( PackStatFilter const &  rval)
default

copy constructor

protocols::simple_filters::PackStatFilter::~PackStatFilter ( )
overridedefault

Member Function Documentation

bool protocols::simple_filters::PackStatFilter::apply ( Pose const &  pose) const
overridevirtual

returns true if the given pose passes the filter, false otherwise. In this case, the test is whether the give pose is the topology we want.

Implements protocols::filters::Filter.

References compute(), filtered_score_, protocols::filters::Filter::score(), and protocols::simple_filters::tr().

std::string protocols::simple_filters::PackStatFilter::class_name ( )
static
filters::FilterOP protocols::simple_filters::PackStatFilter::clone ( ) const
inlineoverridevirtual

make clone

Implements protocols::filters::Filter.

PackStatFilter::Real protocols::simple_filters::PackStatFilter::compute ( Pose const &  pose) const
void protocols::simple_filters::PackStatFilter::filtered_score ( Real const &  ss)

set filtered secondary structure

References filtered_score_, and protocols::filters::Filter::score().

filters::FilterOP protocols::simple_filters::PackStatFilter::fresh_instance ( ) const
inlineoverridevirtual

make fresh instance

Implements protocols::filters::Filter.

std::string protocols::simple_filters::PackStatFilter::name ( ) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::simple_filters::PackStatFilter::parse_my_tag ( TagCOP  tag,
basic::datacache::DataMap &   
)
overridevirtual

get name of this filter

parse xml

Reimplemented from protocols::filters::Filter.

References chain_, filtered_score_, repeats_, and protocols::simple_filters::tr().

void protocols::simple_filters::PackStatFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
PackStatFilter::Real protocols::simple_filters::PackStatFilter::report_sm ( Pose const &  ) const
overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

core::Size protocols::simple_filters::PackStatFilter::chain_

determine which chain to evaluate, 0 is all

Referenced by compute(), and parse_my_tag().

Real protocols::simple_filters::PackStatFilter::filtered_score_
private

Referenced by apply(), filtered_score(), and parse_my_tag().

core::Size protocols::simple_filters::PackStatFilter::repeats_

how many times to repeat evaluation

Referenced by compute(), and parse_my_tag().


The documentation for this class was generated from the following files: