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protocols::simple_filters::TaskAwareSASAFilter Class Reference

#include <TaskAwareSASAFilter.hh>

Inheritance diagram for protocols::simple_filters::TaskAwareSASAFilter:
Inheritance graph
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Public Types

typedef protocols::filters::Filter Super
 
typedef protocols::filters::Filter Filter
 
typedef
protocols::filters::FilterOP 
FilterOP
 
typedef core::Real Real
 
typedef core::pose::Pose Pose
 
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 

Public Member Functions

 TaskAwareSASAFilter ()
 
 TaskAwareSASAFilter (core::pack::task::TaskFactoryOP task_factory, core::Real const t, bool const d, bool const s, core::Real const r, core::Size const j)
 
 TaskAwareSASAFilter (TaskAwareSASAFilter const &rval)
 
 ~TaskAwareSASAFilter () override
 
protocols::filters::FilterOP clone () const override
 
protocols::filters::FilterOP fresh_instance () const override
 
void task_factory (core::pack::task::TaskFactoryOP task_factory)
 
void threshold (core::Real const t)
 
void designable_only (bool const d)
 
void sc_only (bool const s)
 
void probe_radius (core::Real const r)
 
void jump_id (core::Size const j)
 
core::pack::task::TaskFactoryOP task_factory () const
 
core::Real threshold () const
 
bool designable_only () const
 
bool sc_only () const
 
core::Real probe_radius () const
 
core::Size jump_id () const
 
void parse_my_tag (TagCOP tag, basic::datacache::DataMap &) override
 parse xml More...
 
bool apply (core::pose::Pose const &pose) const override
 Returns true if the given pose passes the filter, false otherwise. More...
 
core::Real report_sm (core::pose::Pose const &pose) const override
 used to report filter internals through a score or silent file More...
 
void report (std::ostream &out, core::pose::Pose const &pose) const override
 
core::Real compute (core::pose::Pose const &pose, bool const verbose) const
 calc oligomeric AverageDegree More...
 
std::string name () const override
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
 ~Filter () override
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Attributes

core::pack::task::TaskFactoryOP task_factory_
 
core::Real threshold_
 
bool designable_only_
 
bool sc_only_
 
core::Real probe_radius_
 
core::Size jump_id_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::simple_filters::TaskAwareSASAFilter::TaskAwareSASAFilter ( )
protocols::simple_filters::TaskAwareSASAFilter::TaskAwareSASAFilter ( core::pack::task::TaskFactoryOP  task_factory,
core::Real const  t,
bool const  d,
bool const  s,
core::Real const  r,
core::Size const  j 
)
protocols::simple_filters::TaskAwareSASAFilter::TaskAwareSASAFilter ( TaskAwareSASAFilter const &  rval)
default
protocols::simple_filters::TaskAwareSASAFilter::~TaskAwareSASAFilter ( )
overridedefault

Member Function Documentation

bool protocols::simple_filters::TaskAwareSASAFilter::apply ( core::pose::Pose const &  pose) const
overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), and threshold().

std::string protocols::simple_filters::TaskAwareSASAFilter::class_name ( )
static
protocols::filters::FilterOP protocols::simple_filters::TaskAwareSASAFilter::clone ( ) const
overridevirtual
core::Real protocols::simple_filters::TaskAwareSASAFilter::compute ( core::pose::Pose const &  pose,
bool const  verbose 
) const
void protocols::simple_filters::TaskAwareSASAFilter::designable_only ( bool const  d)

References designable_only_.

bool protocols::simple_filters::TaskAwareSASAFilter::designable_only ( ) const

References designable_only_.

Referenced by compute(), and parse_my_tag().

protocols::filters::FilterOP protocols::simple_filters::TaskAwareSASAFilter::fresh_instance ( ) const
overridevirtual
void protocols::simple_filters::TaskAwareSASAFilter::jump_id ( core::Size const  j)

References jump_id_.

core::Size protocols::simple_filters::TaskAwareSASAFilter::jump_id ( ) const

References jump_id_.

Referenced by compute(), and parse_my_tag().

std::string protocols::simple_filters::TaskAwareSASAFilter::name ( ) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::simple_filters::TaskAwareSASAFilter::parse_my_tag ( TagCOP  tag,
basic::datacache::DataMap &  data 
)
overridevirtual
void protocols::simple_filters::TaskAwareSASAFilter::probe_radius ( core::Real const  r)

References probe_radius_.

core::Real protocols::simple_filters::TaskAwareSASAFilter::probe_radius ( ) const

References probe_radius_.

Referenced by compute(), and parse_my_tag().

void protocols::simple_filters::TaskAwareSASAFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::simple_filters::TaskAwareSASAFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::simple_filters::TaskAwareSASAFilter::report_sm ( core::pose::Pose const &  ) const
overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

void protocols::simple_filters::TaskAwareSASAFilter::sc_only ( bool const  s)

References sc_only_.

bool protocols::simple_filters::TaskAwareSASAFilter::sc_only ( ) const

References sc_only_.

Referenced by compute(), and parse_my_tag().

void protocols::simple_filters::TaskAwareSASAFilter::task_factory ( core::pack::task::TaskFactoryOP  task_factory)

References task_factory(), and task_factory_.

core::pack::task::TaskFactoryOP protocols::simple_filters::TaskAwareSASAFilter::task_factory ( ) const

References task_factory_.

Referenced by compute(), parse_my_tag(), and task_factory().

void protocols::simple_filters::TaskAwareSASAFilter::threshold ( core::Real const  t)
core::Real protocols::simple_filters::TaskAwareSASAFilter::threshold ( ) const

References threshold_.

Referenced by apply(), and parse_my_tag().

Member Data Documentation

bool protocols::simple_filters::TaskAwareSASAFilter::designable_only_
private

Referenced by designable_only().

core::Size protocols::simple_filters::TaskAwareSASAFilter::jump_id_
private

Referenced by jump_id().

core::Real protocols::simple_filters::TaskAwareSASAFilter::probe_radius_
private

Referenced by probe_radius().

bool protocols::simple_filters::TaskAwareSASAFilter::sc_only_
private

Referenced by sc_only().

core::pack::task::TaskFactoryOP protocols::simple_filters::TaskAwareSASAFilter::task_factory_
private

Referenced by task_factory().

core::Real protocols::simple_filters::TaskAwareSASAFilter::threshold_
private

Referenced by threshold().


The documentation for this class was generated from the following files: