Rosetta  2021.16
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Classes | Typedefs
protocols::helical_bundle_predict Namespace Reference

Classes

class  HBP_FinalFullatomRefinementMoveGenerator
 A class to generate ParsedProtocols for the final full-atom refinement step. More...
 
class  HBP_HelixCoilMoveGenerator
 A class for a module to generate ParsedProtocols for the next move in a Monte Carlo trajectory, based on the current state of the pose. This version uses helix-coil transition theory to nucleate and extend helices. More...
 
class  HBP_MoveGenerator
 A base class for a module to generate ParsedProtocols for the next move in a Monte Carlo trajectory, based on the current state of the pose. More...
 
class  HBP_SigmoidalTemperatureScheduleGenerator
 A class to generate a temperature ramping scheme for a simulated annealing trajectory. This version ramps sigmoidally. More...
 
class  HBP_TemperatureScheduleGenerator
 A base class to generate a temperature ramping scheme for a simulated annealing trajectory. More...
 
class  HBPHelix
 An individual helix. This class stores start and end positions, plus helical parameters. More...
 
class  HBPHelixAssignments
 A class for storing the helix assignments for a pose. This can represent those proposed from an input file, or those at the current state of a trajectory. More...
 
class  HBPHelixParameters
 Helical parameters stored by the HBPHelix class. More...
 
class  HelicalBundlePredictApplication
 The meat-and-potatoes for the helical_bundle_predict application, used to predict structures of helical bundles made from canonical or noncanonical building-blocks. More...
 
class  HelicalBundlePredictApplicationOptions
 Options for the application. More...
 

Typedefs

typedef
utility::pointer::shared_ptr
< HBP_FinalFullatomRefinementMoveGenerator
HBP_FinalFullatomRefinementMoveGeneratorOP
 
typedef
utility::pointer::shared_ptr
< HBP_FinalFullatomRefinementMoveGenerator
const > 
HBP_FinalFullatomRefinementMoveGeneratorCOP
 
typedef
utility::pointer::shared_ptr
< HBP_HelixCoilMoveGenerator
HBP_HelixCoilMoveGeneratorOP
 
typedef
utility::pointer::shared_ptr
< HBP_HelixCoilMoveGenerator
const > 
HBP_HelixCoilMoveGeneratorCOP
 
typedef
utility::pointer::shared_ptr
< HBP_MoveGenerator
HBP_MoveGeneratorOP
 
typedef
utility::pointer::shared_ptr
< HBP_MoveGenerator const > 
HBP_MoveGeneratorCOP
 
typedef
utility::pointer::shared_ptr
< HBP_SigmoidalTemperatureScheduleGenerator
HBP_SigmoidalTemperatureScheduleGeneratorOP
 
typedef
utility::pointer::shared_ptr
< HBP_SigmoidalTemperatureScheduleGenerator
const > 
HBP_SigmoidalTemperatureScheduleGeneratorCOP
 
typedef
utility::pointer::shared_ptr
< HBP_TemperatureScheduleGenerator
HBP_TemperatureScheduleGeneratorOP
 
typedef
utility::pointer::shared_ptr
< HBP_TemperatureScheduleGenerator
const > 
HBP_TemperatureScheduleGeneratorCOP
 
typedef
utility::pointer::shared_ptr
< HBPHelixParameters
HBPHelixParametersOP
 
typedef
utility::pointer::shared_ptr
< HBPHelixParameters const > 
HBPHelixParametersCOP
 
typedef
utility::pointer::shared_ptr
< HBPHelix
HBPHelixOP
 
typedef
utility::pointer::shared_ptr
< HBPHelix const > 
HBPHelixCOP
 
typedef
utility::pointer::shared_ptr
< HBPHelixAssignments
HBPHelixAssignmentsOP
 
typedef
utility::pointer::shared_ptr
< HBPHelixAssignments const > 
HBPHelixAssignmentsCOP
 
typedef core::Size HBPStartPosition
 
typedef core::Size HBPEndPosition
 
typedef
utility::pointer::shared_ptr
< HelicalBundlePredictApplication
HelicalBundlePredictApplicationOP
 
typedef
utility::pointer::shared_ptr
< HelicalBundlePredictApplication
const > 
HelicalBundlePredictApplicationCOP
 
typedef
utility::pointer::shared_ptr
< HelicalBundlePredictApplicationOptions
HelicalBundlePredictApplicationOptionsOP
 
typedef
utility::pointer::shared_ptr
< HelicalBundlePredictApplicationOptions
const > 
HelicalBundlePredictApplicationOptionsCOP
 

Typedef Documentation

typedef utility::pointer::shared_ptr< HBP_MoveGenerator const > protocols::helical_bundle_predict::HBP_MoveGeneratorCOP
typedef utility::pointer::shared_ptr< HBPHelix const > protocols::helical_bundle_predict::HBPHelixCOP
typedef utility::pointer::shared_ptr< HBPHelix > protocols::helical_bundle_predict::HBPHelixOP