core::pose::rna::secstruct_legacy Namespace Reference

Classes
class	RNA_SecStructLegacyInfo
	Keep track of RNA centroid information inside the pose. / Rhiju move this to its own namespace! More...

Typedefs
typedef utility::pointer::shared_ptr< RNA_SecStructLegacyInfo >	RNA_SecStructLegacyInfoOP

Functions
bool	has_rna_secstruct_legacy (core::pose::Pose const &pose)
std::string const &	get_rna_secstruct_legacy (core::pose::Pose &pose)
std::string const &	get_rna_secstruct_legacy_from_const_pose (core::pose::Pose const &pose)
void	set_rna_secstruct_legacy (core::pose::Pose &pose, std::string const &rna_secstruct_legacy_string)
void	clear_rna_secstruct_legacy_info (core::pose::Pose &pose)

Typedef Documentation

RNA_SecStructLegacyInfoOP

typedef utility::pointer::shared_ptr< RNA_SecStructLegacyInfo > core::pose::rna::secstruct_legacy::RNA_SecStructLegacyInfoOP

Function Documentation

clear_rna_secstruct_legacy_info()

void core::pose::rna::secstruct_legacy::clear_rna_secstruct_legacy_info

(

core::pose::Pose &

pose

)

remove RNA scoring info object so that it will be re-initialized if necessary

References core::pose::Pose::data(), and core::pose::datacache::CacheableDataType::RNA_SECSTRUCT_INFO.

Referenced by protocols::stepwise::modeler::fix_up_jump_atoms_and_residue_type_variants().

get_rna_secstruct_legacy()

std::string const & core::pose::rna::secstruct_legacy::get_rna_secstruct_legacy

(

core::pose::Pose &

pose

)

Pose must already contain a core::pose::datacache::CacheableDataType::RNA_SCORING_INFO object or this method will fail.

References core::pose::Pose::data(), core::pose::datacache::CacheableDataType::RNA_SECSTRUCT_INFO, set_rna_secstruct_legacy(), and core::pose::Pose::size().

Referenced by core::fragment::rna::FullAtomRNA_Fragments::apply_best_fragment(), protocols::rna::denovo::coarse::CoarseRNA_Fragments::initialize_frag_source_pose(), protocols::rna::denovo::coarse::CoarseRNA_Fragments::pick_random_fragment(), core::fragment::rna::FullAtomRNA_Fragments::pick_random_fragment(), and protocols::rna::denovo::RNA_DeNovoPoseInitializer::setup_fold_tree_legacy().

get_rna_secstruct_legacy_from_const_pose()

std::string const & core::pose::rna::secstruct_legacy::get_rna_secstruct_legacy_from_const_pose

(

core::pose::Pose const &

pose

)

Pose must already contain a core::pose::datacache::CacheableDataType::RNA_SCORING_INFO object or this method will fail.

References core::pose::Pose::data(), and core::pose::datacache::CacheableDataType::RNA_SECSTRUCT_INFO.

Referenced by protocols::recces::params::RECCES_Parameters::RECCES_Parameters().

has_rna_secstruct_legacy()

bool core::pose::rna::secstruct_legacy::has_rna_secstruct_legacy

(

core::pose::Pose const &

pose

)

Pose must already contain a core::pose::datacache::CacheableDataType::RNA_SCORING_INFO object or this method will fail.

References core::pose::Pose::data(), and core::pose::datacache::CacheableDataType::RNA_SECSTRUCT_INFO.

Referenced by protocols::recces::params::RECCES_Parameters::RECCES_Parameters().

set_rna_secstruct_legacy()

void core::pose::rna::secstruct_legacy::set_rna_secstruct_legacy	(	core::pose::Pose &	pose,
		std::string const &	rna_secstruct_legacy_string
	)

Either returns a non-const reference to the rna_scoring object already stored in the pose, or creates a new rna scoring info object, places it in the pose, and returns a non-const reference to it.

References core::pose::Pose::data(), and core::pose::datacache::CacheableDataType::RNA_SECSTRUCT_INFO.

Referenced by core::pose::rna::figure_out_secstruct(), get_rna_secstruct_legacy(), protocols::rna::denovo::RNA_DeNovoPoseInitializer::initialize_secstruct(), protocols::rna::denovo::RNA_DeNovoPoseInitializer::override_secstruct(), and protocols::recces::pose_setup_turner().