#include <ResidueBurialFilter.hh>
◆ ResidueBurialFilter()
protocols::simple_filters::ResidueBurialFilter::ResidueBurialFilter |
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◆ ~ResidueBurialFilter()
protocols::simple_filters::ResidueBurialFilter::~ResidueBurialFilter |
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overridedefault |
◆ apply()
bool protocols::simple_filters::ResidueBurialFilter::apply |
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core::pose::Pose const & |
pose | ) |
const |
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overridevirtual |
Returns true if the given pose passes the filter, false otherwise.
Implements protocols::filters::Filter.
References apply(), compute(), protocols::ligand_docking::ga_ligand_dock::count_neighbors(), distance_threshold(), core::conformation::Residue::name3(), neighbors(), neighbors_, core::pose::parse_resnum(), residue(), core::pose::Pose::residue(), protocols::simple_filters::residue_burial_filter_tracer(), residue_fraction_buried(), protocols::rosetta_scripts::residue_packer_states(), task_factory(), and core::id::to_string().
Referenced by apply().
◆ class_name()
std::string protocols::simple_filters::ResidueBurialFilter::class_name |
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◆ clone()
◆ compute()
counts the number of residues to target_residue_ across all chains in the pose, other than the one containing target_residue_
References core::conformation::Conformation::chain_begin(), core::conformation::Conformation::chain_end(), core::pose::Pose::conformation(), protocols::ligand_docking::ga_ligand_dock::count_neighbors(), core::kinematics::distance(), distance_threshold_, core::conformation::Residue::nbr_atom(), core::pose::parse_resnum(), residue(), core::pose::Pose::residue(), core::conformation::Conformation::residue(), protocols::simple_filters::residue_burial_filter_tracer(), core::pose::Pose::size(), and core::conformation::Residue::xyz().
Referenced by apply(), report(), and report_sm().
◆ distance_threshold() [1/2]
core::Real protocols::simple_filters::ResidueBurialFilter::distance_threshold |
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const |
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inline |
◆ distance_threshold() [2/2]
void protocols::simple_filters::ResidueBurialFilter::distance_threshold |
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core::Real const |
r | ) |
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inline |
◆ fresh_instance()
filters::FilterOP protocols::simple_filters::ResidueBurialFilter::fresh_instance |
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const |
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overridevirtual |
◆ name()
std::string protocols::simple_filters::ResidueBurialFilter::name |
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const |
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overridevirtual |
◆ neighbors() [1/2]
core::Size protocols::simple_filters::ResidueBurialFilter::neighbors |
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const |
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inline |
◆ neighbors() [2/2]
void protocols::simple_filters::ResidueBurialFilter::neighbors |
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core::Size const |
n | ) |
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inline |
◆ parse_my_tag()
◆ provide_xml_schema()
void protocols::simple_filters::ResidueBurialFilter::provide_xml_schema |
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utility::tag::XMLSchemaDefinition & |
xsd | ) |
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◆ report()
void protocols::simple_filters::ResidueBurialFilter::report |
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std::ostream & |
out, |
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core::pose::Pose const & |
pose |
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overridevirtual |
◆ report_sm()
◆ residue() [1/2]
std::string protocols::simple_filters::ResidueBurialFilter::residue |
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const |
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inline |
◆ residue() [2/2]
void protocols::simple_filters::ResidueBurialFilter::residue |
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std::string const & |
s | ) |
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inline |
◆ residue_fraction_buried() [1/2]
core::Real protocols::simple_filters::ResidueBurialFilter::residue_fraction_buried |
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const |
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inline |
◆ residue_fraction_buried() [2/2]
void protocols::simple_filters::ResidueBurialFilter::residue_fraction_buried |
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core::Real const |
r | ) |
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inline |
◆ task_factory() [1/2]
◆ task_factory() [2/2]
◆ distance_threshold_
core::Real protocols::simple_filters::ResidueBurialFilter::distance_threshold_ |
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private |
◆ neighbors_
core::Size protocols::simple_filters::ResidueBurialFilter::neighbors_ |
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◆ residue_
std::string protocols::simple_filters::ResidueBurialFilter::residue_ |
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◆ residue_fraction_buried_
core::Real protocols::simple_filters::ResidueBurialFilter::residue_fraction_buried_ |
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private |
used to determine which residues to check for burial dynamically. All designable residues will be checked, and if any of them is buried, returns true
Referenced by residue_fraction_buried().
◆ task_factory_
The documentation for this class was generated from the following files: