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Namespaces | Functions
HelixFromSequence.cc File Reference

Generates a (transmembrane) helix from a fasta file containing the sequence. More...

#include <protocols/pose_creation/HelixFromSequence.hh>
#include <protocols/pose_creation/HelixFromSequenceCreator.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/sequence/Sequence.hh>
#include <core/conformation/membrane/SpanningTopology.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/membrane/AddMembraneMover.hh>
#include <protocols/membrane/OptimizeProteinEmbeddingMover.hh>
#include <protocols/membrane/TransformIntoMembraneMover.hh>
#include <protocols/relax/membrane/MPRangeRelaxMover.hh>
#include <protocols/relax/RangeRelaxMover.hh>
#include <protocols/simple_moves/ScoreMover.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/types.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/mp.OptionKeys.gen.hh>
#include <basic/options/keys/relax.OptionKeys.gen.hh>
#include <core/sequence/util.hh>
#include <basic/Tracer.hh>
#include <utility/tag/Tag.hh>
#include <cstdlib>
#include <string>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::membrane
 

Functions

static basic::Tracer TR ("protocols.membrane.HelixFromSequence")
 
std::ostream & protocols::membrane::operator<< (std::ostream &os, HelixFromSequence const &mover)
 

Detailed Description

Generates a (transmembrane) helix from a fasta file containing the sequence.

Author
Julia Koehler Leman (julia.nosp@m..koe.nosp@m.hler1.nosp@m.982@.nosp@m.gmail.nosp@m..com)

Function Documentation

static basic::Tracer TR ( "protocols.membrane.HelixFromSequence"  )
static