Rosetta
Public Member Functions | Static Public Member Functions | Private Types | Private Attributes | List of all members
protocols::environment::claims::CutBiasClaim Class Reference

#include <CutBiasClaim.hh>

Inheritance diagram for protocols::environment::claims::CutBiasClaim:
Inheritance graph
[legend]

Public Member Functions

 CutBiasClaim (ClientMoverOP owner, utility::tag::TagCOP tag, basic::datacache::DataMap const &)
 
 CutBiasClaim (ClientMoverOP owner, std::string const &label, core::fragment::SecondaryStructure const &ss)
 
 CutBiasClaim (ClientMoverOP owner, std::string const &label, std::map< LocalPosition, core::Real > const &biases)
 
 CutBiasClaim (ClientMoverOP owner, std::string const &label, std::pair< core::Size, core::Size > const &range, core::Real bias)
 
void yield_elements (FoldTreeSketch const &fts, CutBiasElements &elements) const override
 build ResidueElements that indicate the introduction of a new peptide edge into the fold tree. More...
 
EnvClaimOP clone () const override
 
std::string type () const override
 
void show (std::ostream &os) const override
 
- Public Member Functions inherited from protocols::environment::claims::EnvClaim
 ~EnvClaim () override
 Virtual destructor. More...
 
 EnvClaim (ClientMoverOP)
 
ClientMoverOP owner () const
 A clone used by the EnvClaimFactory to instantiate new EnvClaims using an XML tag. More...
 
void set_owner (ClientMoverOP owner)
 
void annotate (core::pose::Pose const &, core::environment::SequenceAnnotationOP) const
 allow the claim to use any internally queued ResidueSelectors to create sequence annotations. More...
 
virtual void yield_elements (core::pose::Pose const &, DOFElements &) const
 build and export DOFElements, which represent control over non-jump dofs (torsions, bond lengths, angles) final conformation. More...
 

Static Public Member Functions

static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 
static std::string class_name ()
 
- Static Public Member Functions inherited from protocols::environment::claims::EnvClaim
static EnvClaimOP make_claim (std::string const &name, ClientMoverOP owner, utility::tag::TagCOP tag, basic::datacache::DataMap &datamap)
 factory method for claims. More...
 
static bool is_claim (std::string const &name)
 
static void define_envclaim_schema_group (utility::tag::XMLSchemaDefinition &xsd)
 
static std::string envclaim_ct_namer (std::string)
 
static std::string envclaim_group_name ()
 

Private Types

typedef EnvClaim Parent
 
typedef core::environment::FoldTreeSketch FoldTreeSketch
 
typedef core::environment::LocalPosition LocalPosition
 

Private Attributes

std::string label_
 
std::map< LocalPosition, core::Realbiases_
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::environment::claims::EnvClaim
virtual DOFElement wrap_dof_id (core::id::DOF_ID const &id) const
 
ControlStrength parse_ctrl_str (std::string const &str) const
 
void queue_for_annotation (std::string const &label, ResidueSelectorCOP selector)
 

Member Typedef Documentation

◆ FoldTreeSketch

◆ LocalPosition

◆ Parent

Constructor & Destructor Documentation

◆ CutBiasClaim() [1/4]

protocols::environment::claims::CutBiasClaim::CutBiasClaim ( ClientMoverOP  owner,
utility::tag::TagCOP  tag,
basic::datacache::DataMap const &  datamap 
)

◆ CutBiasClaim() [2/4]

protocols::environment::claims::CutBiasClaim::CutBiasClaim ( ClientMoverOP  owner,
std::string const &  label,
core::fragment::SecondaryStructure const &  ss 
)

◆ CutBiasClaim() [3/4]

protocols::environment::claims::CutBiasClaim::CutBiasClaim ( ClientMoverOP  owner,
std::string const &  label,
std::map< LocalPosition, core::Real > const &  biases 
)

◆ CutBiasClaim() [4/4]

protocols::environment::claims::CutBiasClaim::CutBiasClaim ( ClientMoverOP  owner,
std::string const &  label,
std::pair< core::Size, core::Size > const &  range,
core::Real  bias 
)

Member Function Documentation

◆ class_name()

std::string protocols::environment::claims::CutBiasClaim::class_name ( )
static

◆ clone()

EnvClaimOP protocols::environment::claims::CutBiasClaim::clone ( ) const
overridevirtual

◆ provide_xml_schema()

void protocols::environment::claims::CutBiasClaim::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static

◆ show()

void protocols::environment::claims::CutBiasClaim::show ( std::ostream &  os) const
overridevirtual

◆ type()

std::string protocols::environment::claims::CutBiasClaim::type ( ) const
overridevirtual

◆ yield_elements()

void protocols::environment::claims::CutBiasClaim::yield_elements ( FoldTreeSketch const &  ,
CutBiasElements  
) const
overridevirtual

build ResidueElements that indicate the introduction of a new peptide edge into the fold tree.

Reimplemented from protocols::environment::claims::EnvClaim.

References protocols::environment::claims::CutBiasElement::bias, biases_, and protocols::environment::claims::CutBiasElement::p.

Member Data Documentation

◆ biases_

std::map< LocalPosition, core::Real > protocols::environment::claims::CutBiasClaim::biases_
private

Referenced by CutBiasClaim(), and yield_elements().

◆ label_

std::string protocols::environment::claims::CutBiasClaim::label_
private

Referenced by CutBiasClaim().


The documentation for this class was generated from the following files: