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protocols::aa_composition Namespace Reference

Classes

class  AddCompositionConstraintMover
 
class  AddCompositionConstraintMoverCreator
 
class  AddHelixSequenceConstraintsMover
 This mover adds sequence constraints to the ends of each helix, requiring at least one positively-charged residue in the three C-terminal residues, and at least one negatively-charged resiude in the three N-terminal residues. More...
 
class  AddHelixSequenceConstraintsMoverCreator
 
class  AddMHCEpitopeConstraintMover
 
class  AddMHCEpitopeConstraintMoverCreator
 
class  AddNetChargeConstraintMover
 
class  AddNetChargeConstraintMoverCreator
 
class  ClearCompositionConstraintsMover
 
class  ClearCompositionConstraintsMoverCreator
 

Typedefs

typedef
utility::pointer::shared_ptr
< AddCompositionConstraintMover
AddCompositionConstraintMoverOP
 
typedef
utility::pointer::shared_ptr
< AddCompositionConstraintMover
const > 
AddCompositionConstraintMoverCOP
 
typedef
utility::pointer::shared_ptr
< AddHelixSequenceConstraintsMover
AddHelixSequenceConstraintsMoverOP
 
typedef
utility::pointer::shared_ptr
< AddHelixSequenceConstraintsMover
const > 
AddHelixSequenceConstraintsMoverCOP
 
typedef
utility::pointer::shared_ptr
< AddMHCEpitopeConstraintMover
AddMHCEpitopeConstraintMoverOP
 
typedef
utility::pointer::shared_ptr
< AddMHCEpitopeConstraintMover
const > 
AddMHCEpitopeConstraintMoverCOP
 
typedef
utility::pointer::shared_ptr
< AddNetChargeConstraintMover
AddNetChargeConstraintMoverOP
 
typedef
utility::pointer::shared_ptr
< AddNetChargeConstraintMover
const > 
AddNetChargeConstraintMoverCOP
 
typedef
utility::pointer::shared_ptr
< ClearCompositionConstraintsMover
ClearCompositionConstraintsMoverOP
 
typedef
utility::pointer::shared_ptr
< ClearCompositionConstraintsMover
const > 
ClearCompositionConstraintsMoverCOP
 

Functions

std::ostream & operator<< (std::ostream &os, AddHelixSequenceConstraintsMover const &mover)
 private methods /// More...
 
void find_helices_over_length (core::pose::Pose const &pose, utility::vector1< std::pair< core::Size, core::Size > > &helices, core::Size const min_length)
 Given a pose, run DSSP and populate the helices list. More...
 

Typedef Documentation

Function Documentation

void protocols::aa_composition::find_helices_over_length ( core::pose::Pose const &  pose,
utility::vector1< std::pair< core::Size, core::Size > > &  helices,
core::Size const  min_length 
)
std::ostream & protocols::aa_composition::operator<< ( std::ostream &  os,
AddHelixSequenceConstraintsMover const &  mover 
)