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protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator Class Reference

Generates atom pair constraints for a set of residues from the current or reference pose. More...

#include <AutomaticSheetConstraintGenerator.hh>

Inheritance diagram for protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator:
Inheritance graph
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Public Member Functions

 AutomaticSheetConstraintGenerator ()
 
 ~AutomaticSheetConstraintGenerator () override
 
protocols::constraint_generator::ConstraintGeneratorOP clone () const override
 
core::scoring::constraints::ConstraintCOPs apply (core::pose::Pose const &pose) const override
 generates constraints and adds them to the pose More...
 
void sd (core::Real const sd)
 
core::Real sd ()
 
void distance (core::Real const dist)
 
core::Real distance ()
 
- Public Member Functions inherited from protocols::constraint_generator::ConstraintGenerator
 ConstraintGenerator (std::string const &class_name)
 
 ~ConstraintGenerator () override
 
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &citations) const
 Provide citations to the passed CitationCollectionList. This allows the constraint generator to provide citations for itself and for any modules that it invokes. More...
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data)
 parses XML tag – calls protected parse_tag() function More...
 
std::string const & id () const
 
void set_id (std::string const &id)
 
std::string const & class_name () const
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Protected Member Functions

void parse_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 called by parse_my_tag – should not be used directly More...
 

Private Member Functions

core::scoring::func::FuncOP create_bb_angle_func (core::Real const ideal_angle) const
 
core::scoring::func::FuncOP create_bb_dihedral_func (core::Real const ideal_dihedral) const
 
core::scoring::func::FuncOP weighted_func (core::scoring::func::FuncOP func) const
 

Static Private Member Functions

static std::string add_sub_ct_name (std::string tag_name)
 
static core::Real default_sd ()
 
static core::Real default_distance ()
 

Private Attributes

core::Real sd_
 
core::Real distance_
 
core::Real angle_tolerance_
 
core::Real bb_dihedral_tolerance_
 
core::Real weight_
 

Detailed Description

Generates atom pair constraints for a set of residues from the current or reference pose.

Constructor & Destructor Documentation

protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::AutomaticSheetConstraintGenerator ( )
protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::~AutomaticSheetConstraintGenerator ( )
overridedefault

Member Function Documentation

static std::string protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::add_sub_ct_name ( std::string  tag_name)
inlinestaticprivate
core::scoring::constraints::ConstraintCOPs protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::apply ( core::pose::Pose const &  pose) const
overridevirtual
static std::string protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::class_name ( )
inlinestatic
protocols::constraint_generator::ConstraintGeneratorOP protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::clone ( ) const
overridevirtual
core::scoring::func::FuncOP protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::create_bb_angle_func ( core::Real const  ideal_angle) const
private

References angle_tolerance_, and weighted_func().

Referenced by apply().

core::scoring::func::FuncOP protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::create_bb_dihedral_func ( core::Real const  ideal_dihedral) const
private
static core::Real protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::default_distance ( )
inlinestaticprivate

Referenced by parse_tag(), and provide_xml_schema().

static core::Real protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::default_sd ( )
inlinestaticprivate

Referenced by parse_tag(), and provide_xml_schema().

void protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::distance ( core::Real const  dist)
inline

References distance_.

core::Real protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::distance ( )
inline

References distance_.

Referenced by parse_tag().

void protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::parse_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap &  data 
)
overrideprotectedvirtual

called by parse_my_tag – should not be used directly

Implements protocols::constraint_generator::ConstraintGenerator.

References default_distance(), default_sd(), distance(), and sd().

void protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::sd ( core::Real const  sd)
inline

References sd(), and sd_.

Referenced by sd().

core::Real protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::sd ( )
inline

References sd_.

Referenced by parse_tag().

core::scoring::func::FuncOP protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::weighted_func ( core::scoring::func::FuncOP  func) const
private

Member Data Documentation

core::Real protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::angle_tolerance_
private

Referenced by create_bb_angle_func().

core::Real protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::bb_dihedral_tolerance_
private

Referenced by create_bb_dihedral_func().

core::Real protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::distance_
private

Referenced by apply(), and distance().

core::Real protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::sd_
private

Referenced by sd().

core::Real protocols::fold_from_loops::constraint_generator::AutomaticSheetConstraintGenerator::weight_
private

Referenced by weighted_func().


The documentation for this class was generated from the following files: