Rosetta  2020.46
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RB_geometry.cc File Reference
#include <protocols/rigid/RB_geometry.hh>
#include <core/pose/Pose.hh>
#include <protocols/scoring/Interface.hh>
#include <core/conformation/Residue.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/pose/util.hh>
#include <core/pose/chains_util.hh>
#include <numeric/conversions.hh>
#include <numeric/random/random.hh>
#include <numeric/trig.functions.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/xyzMatrix.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::geometry
 

Functions

static basic::Tracer TR ("protocols.geometry.RB_geometry")
 
numeric::xyzMatrix_real protocols::geometry::random_reorientation_matrix (const core::Real phi_range, const core::Real psi_range)
 
core::Vector protocols::geometry::centroid_by_residues (core::conformation::ResidueCOPs residue_c_pointers)
 
core::Vector protocols::geometry::centroid_by_chains (core::pose::Pose const &pose, utility::vector1< core::Size > chain_ids)
 
core::Vector protocols::geometry::centroid_by_chain (core::pose::Pose const &pose, core::Size const chain_id)
 
void protocols::geometry::centroids_by_jump (core::pose::Pose const &pose, core::Size const jump_id, core::Vector &upstream_ctrd, core::Vector &downstream_ctrd)
 Unweighted centroids of all atoms upstream of the jump vs. all atoms downstream of the jump. More...
 
void protocols::geometry::centroids_by_jump (core::pose::Pose const &pose, core::Size const jump_id, core::Vector &upstream_ctrd, core::Vector &downstream_ctrd, utility::vector1< bool > ok_for_centroid_calculation)
 Unweighted centroids of all atoms upstream of the jump vs. all atoms downstream of the jump. More...
 
std::pair< core::Vector,
core::Vector
protocols::geometry::centroid_pair_by_jump (core::pose::Pose const &pose, core::Size jump_id)
 
core::Vector protocols::geometry::upstream_centroid_by_jump (core::pose::Pose const &pose, core::Size jump_id)
 
core::Vector protocols::geometry::downstream_centroid_by_jump (core::pose::Pose const &pose, core::Size jump_id)
 
void protocols::geometry::centroids_by_jump_int (core::pose::Pose const &pose, core::Size jump_id, core::Vector &upstream_ctrd, core::Vector &downstream_ctrd)
 Unweighted centroids of all atoms upstream of the jump vs. all atoms downstream of the jump for interface residues only. needed to calculate rb_centers for fullatom docking - Sid C. More...
 
numeric::xyzVector< core::Realprotocols::geometry::center_of_mass (core::pose::Pose const &pose, int const start, int const stop)
 calculates the center of mass of a pose More...
 

Function Documentation

static basic::Tracer TR ( "protocols.geometry.RB_geometry"  )
static