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bool | protocols::jumping::remove_cut (core::Size cutpoint, core::pose::Pose &pose, core::kinematics::FoldTree const &final_fold_tree=core::kinematics::FoldTree()) |
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bool | protocols::jumping::remove_cut (core::Size cutpoint, core::kinematics::FoldTree &fold_tree, core::kinematics::FoldTree const &final_fold_tree=core::kinematics::FoldTree()) |
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void | protocols::jumping::close_chainbreaks (loops::loop_closure::ccd::SlidingWindowLoopClosureOP closure_protocol, core::pose::Pose &pose, checkpoint::CheckPointer &checkpoint, const std::string &decoy_tag, core::kinematics::FoldTree const &final_fold_tree=core::kinematics::FoldTree()) |
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void | protocols::jumping::safe_secstruct (pose::Pose &pose) |
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void | protocols::jumping::get_pleating (pose::Pose const &pose, core::Size const pos1, core::Size const pos2, core::Size &orientation, core::Size &pleating) |
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void | protocols::jumping::get_pairing_geometry (pose::Pose const &pose, core::Size const res1, core::Size const res2, Real &orientation, Real &pleating1, Real &pleating2) |
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core::fragment::JumpingFrameOP | protocols::jumping::generate_empty_jump_frame (core::Size startpos, core::Size endpos, core::Size length) |
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core::fragment::JumpingFrameOP | protocols::jumping::generate_jump_frame (core::Size startpos, core::Size endpos, bool bWithTorsion) |
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void | protocols::jumping::assign_ss_dssp (core::pose::Pose &pose) |
| Assign secondary structure using DSSP. More...
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