Rosetta
protocols::features::strand_assembly::SandwichFeatures Member List

This is the complete list of members for protocols::features::strand_assembly::SandwichFeatures, including all inherited members.

allowed_deviation_for_turn_type_id_protocols::features::strand_assembly::SandwichFeaturesprivate
CB_b_factor_cutoff_for_electrostatic_interactions_protocols::features::strand_assembly::SandwichFeaturesprivate
chance_of_being_canonical_swprotocols::features::strand_assembly::SandwichFeaturesprivate
check_canonicalness_cutoff_protocols::features::strand_assembly::SandwichFeaturesprivate
check_N_to_C_direction_by_protocols::features::strand_assembly::SandwichFeaturesprivate
check_relevant_residues(utility::vector1< bool > const &relevant_residues, core::Size res1) constprotocols::features::FeaturesReporter
check_relevant_residues(utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) constprotocols::features::FeaturesReporter
check_relevant_residues(utility::vector1< bool > const &relevant_residues, utility::vector1< core::Size > const &residues) constprotocols::features::FeaturesReporter
check_relevant_residues_range(utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) constprotocols::features::FeaturesReporter
class_name()protocols::features::strand_assembly::SandwichFeaturesstatic
count_AA_with_direction_protocols::features::strand_assembly::SandwichFeaturesprivate
delete_record(StructureID, utility::sql_database::sessionOP)protocols::features::FeaturesReporterinlinevirtual
delete_records_from_table(std::string const &table_name, StructureID struct_id, utility::sql_database::sessionOP db_session)protocols::features::FeaturesReporterprotected
distance_cutoff_for_electrostatic_interactions_protocols::features::strand_assembly::SandwichFeaturesprivate
do_not_connect_sheets_by_loops_protocols::features::strand_assembly::SandwichFeaturesprivate
do_not_write_resfile_of_sandwich_that_has_non_canonical_LR_protocols::features::strand_assembly::SandwichFeaturesprivate
exclude_desinated_pdbs_protocols::features::strand_assembly::SandwichFeaturesprivate
exclude_sandwich_that_has_near_backbone_atoms_between_sheets_protocols::features::strand_assembly::SandwichFeaturesprivate
exclude_sandwich_that_has_non_canonical_LR_protocols::features::strand_assembly::SandwichFeaturesprivate
exclude_sandwich_that_has_non_canonical_properties_protocols::features::strand_assembly::SandwichFeaturesprivate
exclude_sandwich_that_has_non_canonical_shortest_dis_between_facing_aro_in_sw_protocols::features::strand_assembly::SandwichFeaturesprivate
exclude_sandwich_that_is_linked_w_same_direction_strand_protocols::features::strand_assembly::SandwichFeaturesprivate
exclude_sandwich_that_is_suspected_to_have_not_facing_2_sheets_protocols::features::strand_assembly::SandwichFeaturesprivate
exclude_sandwich_with_SS_bond_protocols::features::strand_assembly::SandwichFeaturesprivate
extract_sandwich_protocols::features::strand_assembly::SandwichFeaturesprivate
features_reporter_dependencies() const overrideprotocols::features::strand_assembly::SandwichFeaturesvirtual
FeaturesReporter()protocols::features::FeaturesReporterinline
find_tag(core::pose::Pose const &pose) constprotocols::features::FeaturesReporterprotected
generate_scorefxn(bool fullatom=false)protocols::features::strand_assembly::SandwichFeaturesprivate
get_relevant_residues_mode() constprotocols::features::FeaturesReporter
inter_sheet_distance_to_see_whether_a_sheet_is_surrounded_by_other_sheets_protocols::features::strand_assembly::SandwichFeaturesprivate
load_into_pose(utility::sql_database::sessionOP, StructureID, core::pose::Pose &)protocols::features::FeaturesReporterinlinevirtual
max_abs_inter_strand_dihedral_to_not_be_same_direction_strands_protocols::features::strand_assembly::SandwichFeaturesprivate
max_CA_CA_dis_protocols::features::strand_assembly::SandwichFeaturesprivate
max_E_in_extracted_sw_loop_protocols::features::strand_assembly::SandwichFeaturesprivate
max_ending_loop_size_protocols::features::strand_assembly::SandwichFeaturesprivate
max_H_in_extracted_sw_loop_protocols::features::strand_assembly::SandwichFeaturesprivate
max_inter_sheet_dis_CA_CA_protocols::features::strand_assembly::SandwichFeaturesprivate
max_inter_strand_angle_to_not_be_same_direction_strands_protocols::features::strand_assembly::SandwichFeaturesprivate
max_num_strands_to_deal_protocols::features::strand_assembly::SandwichFeaturesprivate
max_num_sw_per_pdb_protocols::features::strand_assembly::SandwichFeaturesprivate
max_sheet_angle_by_four_term_cen_res_protocols::features::strand_assembly::SandwichFeaturesprivate
max_sheet_angle_with_cen_res_in_smaller_sheet_and_two_terminal_res_in_larger_sheet_protocols::features::strand_assembly::SandwichFeaturesprivate
max_sheet_dis_protocols::features::strand_assembly::SandwichFeaturesprivate
max_sheet_torsion_cen_res_protocols::features::strand_assembly::SandwichFeaturesprivate
max_starting_loop_size_protocols::features::strand_assembly::SandwichFeaturesprivate
min_C_O_N_angle_protocols::features::strand_assembly::SandwichFeaturesprivate
min_CA_CA_dis_protocols::features::strand_assembly::SandwichFeaturesprivate
min_inter_sheet_dis_CA_CA_protocols::features::strand_assembly::SandwichFeaturesprivate
min_N_H_O_angle_between_two_sheets_protocols::features::strand_assembly::SandwichFeaturesprivate
min_N_O_dis_between_two_sheets_protocols::features::strand_assembly::SandwichFeaturesprivate
min_num_strands_in_sheet_protocols::features::strand_assembly::SandwichFeaturesprivate
min_num_strands_to_deal_protocols::features::strand_assembly::SandwichFeaturesprivate
min_primary_seq_distance_diff_for_electrostatic_interactions_protocols::features::strand_assembly::SandwichFeaturesprivate
min_res_in_strand_protocols::features::strand_assembly::SandwichFeaturesprivate
min_sheet_angle_by_four_term_cen_res_protocols::features::strand_assembly::SandwichFeaturesprivate
min_sheet_dis_protocols::features::strand_assembly::SandwichFeaturesprivate
min_sheet_torsion_cen_res_protocols::features::strand_assembly::SandwichFeaturesprivate
no_helix_in_pdb_protocols::features::strand_assembly::SandwichFeaturesprivate
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &) overrideprotocols::features::strand_assembly::SandwichFeaturesvirtual
primary_seq_distance_cutoff_for_beta_sheet_capping_after_C_term_capping_protocols::features::strand_assembly::SandwichFeaturesprivate
primary_seq_distance_cutoff_for_beta_sheet_capping_after_N_term_capping_protocols::features::strand_assembly::SandwichFeaturesprivate
primary_seq_distance_cutoff_for_beta_sheet_capping_before_C_term_capping_protocols::features::strand_assembly::SandwichFeaturesprivate
primary_seq_distance_cutoff_for_beta_sheet_capping_before_N_term_capping_protocols::features::strand_assembly::SandwichFeaturesprivate
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::features::strand_assembly::SandwichFeaturesstatic
relevant_residues_mode_protocols::features::FeaturesReporterprotected
report_features(core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, StructureID struct_id, utility::sql_database::sessionOP db_session) overrideprotocols::features::strand_assembly::SandwichFeaturesvirtual
protocols::features::FeaturesReporter::report_features(core::pose::Pose const &, StructureID, utility::sql_database::sessionOP)protocols::features::FeaturesReporter
SandwichFeatures()protocols::features::strand_assembly::SandwichFeatures
schema() constprotocols::features::FeaturesReporterinlinevirtual
set_relevant_residues_mode(RelevantResiduesMode::T setting)protocols::features::FeaturesReporter
type_name() const overrideprotocols::features::strand_assembly::SandwichFeaturesvirtual
unit_test_pass_identifierprotocols::features::strand_assembly::SandwichFeaturesprivate
write_AA_kind_files_protocols::features::strand_assembly::SandwichFeaturesprivate
write_all_info_files_protocols::features::strand_assembly::SandwichFeaturesprivate
write_beta_sheet_capping_info_protocols::features::strand_assembly::SandwichFeaturesprivate
write_chain_B_resnum_protocols::features::strand_assembly::SandwichFeaturesprivate
write_electrostatic_interactions_of_all_residues_protocols::features::strand_assembly::SandwichFeaturesprivate
write_electrostatic_interactions_of_all_residues_in_a_strand_protocols::features::strand_assembly::SandwichFeaturesprivate
write_electrostatic_interactions_of_surface_residues_in_a_strand_protocols::features::strand_assembly::SandwichFeaturesprivate
write_heading_directions_of_all_AA_in_a_strand_protocols::features::strand_assembly::SandwichFeaturesprivate
write_loop_AA_distribution_files_protocols::features::strand_assembly::SandwichFeaturesprivate
write_p_aa_pp_files_protocols::features::strand_assembly::SandwichFeaturesprivate
write_phi_psi_of_all_protocols::features::strand_assembly::SandwichFeaturesprivate
write_phi_psi_of_E_protocols::features::strand_assembly::SandwichFeaturesprivate
write_rama_at_AA_to_files_protocols::features::strand_assembly::SandwichFeaturesprivate
write_resfile_protocols::features::strand_assembly::SandwichFeaturesprivate
write_resfile_NOT_FWY_on_surface_protocols::features::strand_assembly::SandwichFeaturesprivate
write_resfile_to_minimize_too_many_core_heading_FWY_on_core_strands_protocols::features::strand_assembly::SandwichFeaturesprivate
write_resfile_to_minimize_too_many_core_heading_FWY_on_edge_strands_protocols::features::strand_assembly::SandwichFeaturesprivate
write_resfile_to_minimize_too_much_hydrophobic_surface_protocols::features::strand_assembly::SandwichFeaturesprivate
write_resfile_when_seq_rec_is_bad_protocols::features::strand_assembly::SandwichFeaturesprivate
write_schema_to_db(utility::sql_database::sessionOP db_session) const overrideprotocols::features::strand_assembly::SandwichFeaturesvirtual
write_strand_AA_distribution_files_protocols::features::strand_assembly::SandwichFeaturesprivate
wt_for_pro_in_1st_inter_sheet_loop_protocols::features::strand_assembly::SandwichFeaturesprivate
wt_for_pro_in_3rd_inter_sheet_loop_protocols::features::strand_assembly::SandwichFeaturesprivate
wt_for_pro_in_starting_loop_protocols::features::strand_assembly::SandwichFeaturesprivate
~FeaturesReporter() overrideprotocols::features::FeaturesReporter
~SandwichFeatures() overrideprotocols::features::strand_assembly::SandwichFeatures