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protocols::jd2::RNA_DeNovoJobOutputter Member List

This is the complete list of members for protocols::jd2::RNA_DeNovoJobOutputter, including all inherited members.

add_evaluation(evaluation::PoseEvaluatorOP)protocols::jd2::JobOutputter
add_silent_struct(core::io::silent::SilentStructOP ss, utility::file::FileName const &fn)protocols::jd2::RNA_DeNovoJobOutputterprivate
affixed_numbered_name(JobCOP job)protocols::jd2::JobOutputterprotected
bWriteIntermediateFiles_protocols::jd2::RNA_DeNovoJobOutputterprivate
bWriteIntermediateStructures_protocols::jd2::RNA_DeNovoJobOutputterprivate
bWriteNoStructures_protocols::jd2::RNA_DeNovoJobOutputterprivate
call_output_observers(core::pose::Pose const &pose, JobOP job) const protocols::jd2::JobOutputter
clear_evaluators()protocols::jd2::JobOutputter
dump_pose(utility::file::FileName const &filename, JobCOP job, core::pose::Pose const &pose, bool bWriteScoreOnly, int copy_count=-1, std::string const &suffix="")protocols::jd2::RNA_DeNovoJobOutputterprotected
evaluate(core::pose::Pose &pose, std::string tag, core::io::silent::SilentStruct &pss) const protocols::jd2::JobOutputter
evaluators() const protocols::jd2::JobOutputter
file(JobCOP job, std::string const &data) overrideprotocols::jd2::FileJobOutputtervirtual
FileJobOutputter()protocols::jd2::FileJobOutputter
filename(JobCOP) const overrideprotocols::jd2::RNA_DeNovoJobOutputterinlinevirtual
final_pose(JobOP job, core::pose::Pose const &pose, std::string const &tag) overrideprotocols::jd2::RNA_DeNovoJobOutputtervirtual
flush() overrideprotocols::jd2::RNA_DeNovoJobOutputtervirtual
forced_silent_struct_type_protocols::jd2::RNA_DeNovoJobOutputterprivate
job_has_completed(JobCOP job) overrideprotocols::jd2::RNA_DeNovoJobOutputtervirtual
JobOutputter()protocols::jd2::JobOutputter
n_to_buffer_protocols::jd2::RNA_DeNovoJobOutputterprivate
other_pose(JobOP job, core::pose::Pose const &pose, std::string const &tag, int copy_count=-1, bool score_only=false) overrideprotocols::jd2::RNA_DeNovoJobOutputtervirtual
output_name(JobCOP job) overrideprotocols::jd2::RNA_DeNovoJobOutputtervirtual
parent typedefprotocols::jd2::RNA_DeNovoJobOutputter
random_flush_frequency_protocols::jd2::RNA_DeNovoJobOutputterprivate
read_done_jobs()protocols::jd2::RNA_DeNovoJobOutputterprivate
RNA_DeNovoJobOutputter()protocols::jd2::RNA_DeNovoJobOutputter
saved_structs_protocols::jd2::RNA_DeNovoJobOutputterprivate
scorefile(JobCOP job, core::pose::Pose const &pose, std::string prefix_tag="", std::string suffix_tag="", std::string scorefile="")protocols::jd2::FileJobOutputterprotectedvirtual
scorefile_name()protocols::jd2::FileJobOutputterinline
set_defaults()protocols::jd2::RNA_DeNovoJobOutputterprivate
set_evaluators(evaluation::PoseEvaluators const &)protocols::jd2::JobOutputter
set_forced_silent_struct_type(std::string const &)protocols::jd2::RNA_DeNovoJobOutputter
set_silent_file_name(utility::file::FileName const &name)protocols::jd2::RNA_DeNovoJobOutputter
set_write_no_structures(bool value=true)protocols::jd2::RNA_DeNovoJobOutputterinline
set_write_separate_scorefile(bool write_separate_scorefile)protocols::jd2::RNA_DeNovoJobOutputter
silent_file_protocols::jd2::RNA_DeNovoJobOutputterprivate
silent_file_tags_protocols::jd2::RNA_DeNovoJobOutputterprivate
starting_pose(core::pose::Pose const &)protocols::jd2::JobOutputtervirtual
write_all_structs()protocols::jd2::RNA_DeNovoJobOutputterprivate
write_scorefile() const protocols::jd2::FileJobOutputterinline
write_separate_scorefile_protocols::jd2::RNA_DeNovoJobOutputterprivate
~FileJobOutputter() overrideprotocols::jd2::FileJobOutputter
~JobOutputter() overrideprotocols::jd2::JobOutputter
~RNA_DeNovoJobOutputter() overrideprotocols::jd2::RNA_DeNovoJobOutputter