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protocols::toolbox::CovalentResidueNetwork Class Reference

Creates networks based on covalent connections between residues. More...

#include <NetworkAlgorithms.hh>

Inheritance diagram for protocols::toolbox::CovalentResidueNetwork:
Inheritance graph

Public Member Functions

void generate_edges (core::pose::Pose const &pose) override
 generate a list of edges from the pose – MUST be reimplemented for each type of network More...
- Public Member Functions inherited from protocols::toolbox::ResidueNetwork
 ResidueNetwork ()
 default constructor More...
 ~ResidueNetwork () override
 destructor More...
void create_from_pose (core::pose::Pose const &pose)
 create a network from a pose More...
void clear_edges ()
 empties edges More...
void dijkstras (core::Size const resi) const
 run Dijkstra's shortest path algorithm on the given list of nodes after execution, the "distanceFromStart" variable of each node will contain the distance from residue resi More...
core::Real connectivity_index (core::Size const resi) const
 calculates the connectivity index of residue resi in the context of the network More...
core::Real average_shortest_path_length () const
 calculates the average shortest path length of the network More...
std::list< NodeOP > const & nodes () const

Detailed Description

Creates networks based on covalent connections between residues.

Member Function Documentation

void protocols::toolbox::CovalentResidueNetwork::generate_edges ( core::pose::Pose const &  pose)

The documentation for this class was generated from the following files: