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ScoreType.hh File Reference

Score type enumeration. More...

#include <iosfwd>
#include <utility/vector1.hh>

Namespaces

 core
 A class for reading in the atom type properties.
 
 core::scoring
 

Typedefs

typedef utility::vector1
< ScoreType > 
core::scoring::ScoreTypes
 

Enumerations

enum  core::scoring::ScoreType {
  core::scoring::fa_atr = 1, core::scoring::fa_rep, core::scoring::fa_sol, core::scoring::fa_intra_atr,
  core::scoring::fa_intra_rep, core::scoring::fa_intra_sol, core::scoring::fa_intra_atr_xover4, core::scoring::fa_intra_rep_xover4,
  core::scoring::fa_intra_sol_xover4, core::scoring::fa_intra_atr_nonprotein, core::scoring::fa_intra_rep_nonprotein, core::scoring::fa_intra_sol_nonprotein,
  core::scoring::fa_intra_RNA_base_phos_atr, core::scoring::fa_intra_RNA_base_phos_rep, core::scoring::fa_intra_RNA_base_phos_sol, core::scoring::fa_atr_dummy,
  core::scoring::fa_rep_dummy, core::scoring::fa_sol_dummy, core::scoring::fa_vdw_tinker, core::scoring::lk_hack,
  core::scoring::lk_ball, core::scoring::lk_ball_wtd, core::scoring::lk_ball_iso, core::scoring::lk_ball_bridge,
  core::scoring::lk_ball_bridge_uncpl, core::scoring::coarse_fa_atr, core::scoring::coarse_fa_rep, core::scoring::coarse_fa_sol,
  core::scoring::coarse_beadlj, core::scoring::mm_lj_intra_rep, core::scoring::mm_lj_intra_atr, core::scoring::mm_lj_inter_rep,
  core::scoring::mm_lj_inter_atr, core::scoring::mm_twist, core::scoring::mm_bend, core::scoring::mm_stretch,
  core::scoring::lk_costheta, core::scoring::lk_polar, core::scoring::lk_nonpolar, core::scoring::lk_polar_intra_RNA,
  core::scoring::lk_nonpolar_intra_RNA, core::scoring::fa_elec, core::scoring::fa_elec_bb_bb, core::scoring::fa_elec_bb_sc,
  core::scoring::fa_elec_sc_sc, core::scoring::fa_intra_elec, core::scoring::h2o_hbond, core::scoring::dna_dr,
  core::scoring::dna_bp, core::scoring::dna_bs, core::scoring::dna_ref, core::scoring::peptide_bond,
  core::scoring::pcs, core::scoring::pcsTs1, core::scoring::pcsTs2, core::scoring::pcsTs3,
  core::scoring::pcsTs4, core::scoring::pcs2, core::scoring::fastsaxs, core::scoring::saxs_score,
  core::scoring::saxs_cen_score, core::scoring::saxs_fa_score, core::scoring::pddf_score, core::scoring::fiberdiffraction,
  core::scoring::fiberdiffractiondens, core::scoring::epr_deer_score, core::scoring::fa_mbenv, core::scoring::fa_mbsolv,
  core::scoring::fa_elec_rna_phos_phos, core::scoring::fa_elec_rna_phos_sugr, core::scoring::fa_elec_rna_phos_base, core::scoring::fa_elec_rna_sugr_sugr,
  core::scoring::fa_elec_rna_sugr_base, core::scoring::fa_elec_rna_base_base, core::scoring::fa_elec_rna_phos_phos_fast, core::scoring::fa_elec_rna_phos_sugr_fast,
  core::scoring::fa_elec_rna_phos_base_fast, core::scoring::fa_elec_rna_sugr_sugr_fast, core::scoring::fa_elec_rna_sugr_base_fast, core::scoring::fa_elec_rna_base_base_fast,
  core::scoring::fa_elec_aro_aro, core::scoring::fa_elec_aro_all, core::scoring::hack_aro, core::scoring::rna_fa_atr_base,
  core::scoring::rna_fa_rep_base, core::scoring::rna_data_backbone, core::scoring::ch_bond, core::scoring::ch_bond_bb_bb,
  core::scoring::ch_bond_sc_sc, core::scoring::ch_bond_bb_sc, core::scoring::pro_close, core::scoring::rama2b,
  core::scoring::vdw, core::scoring::cenpack, core::scoring::cenpack_smooth, core::scoring::cen_hb,
  core::scoring::hybrid_vdw, core::scoring::gauss, core::scoring::rna_vdw, core::scoring::rnp_vdw,
  core::scoring::rna_base_backbone, core::scoring::rna_backbone_backbone, core::scoring::rna_repulsive, core::scoring::rna_base_pair_pairwise,
  core::scoring::rna_base_axis_pairwise, core::scoring::rna_base_stagger_pairwise, core::scoring::rna_base_stack_pairwise, core::scoring::rna_base_stack_axis_pairwise,
  core::scoring::rna_data_base, core::scoring::rna_base_pair, core::scoring::rna_base_axis, core::scoring::rna_base_stagger,
  core::scoring::rna_base_stack, core::scoring::rna_base_stack_axis, core::scoring::rnp_base_pair, core::scoring::rnp_stack,
  core::scoring::rnp_stack_xy, core::scoring::rnp_pair, core::scoring::rnp_pair_dist, core::scoring::rnp_aa_to_rna_backbone,
  core::scoring::rna_mg_point, core::scoring::rna_mg_point_indirect, core::scoring::mg, core::scoring::mg_lig,
  core::scoring::mg_sol, core::scoring::mg_ref, core::scoring::hoh_ref, core::scoring::rna_torsion,
  core::scoring::rna_torsion_sc, core::scoring::rna_suite, core::scoring::rna_jr_suite, core::scoring::suiteness_bonus,
  core::scoring::tna_suite, core::scoring::rna_sugar_close, core::scoring::fa_stack, core::scoring::fa_stack_lower,
  core::scoring::fa_stack_upper, core::scoring::fa_stack_aro, core::scoring::fa_stack_ext, core::scoring::fa_stack_sol,
  core::scoring::fa_stack_lr, core::scoring::fa_stack_rna_protein, core::scoring::fa_stack_rna_protein_aro, core::scoring::ss_contact_worst,
  core::scoring::stack_elec, core::scoring::stack_elec_base_base, core::scoring::stack_elec_base_bb, core::scoring::alignment,
  core::scoring::dna_bb_torsion, core::scoring::dna_sugar_close, core::scoring::dna_base_distance, core::scoring::geom_sol_fast,
  core::scoring::geom_sol_fast_intra_RNA, core::scoring::fa_cust_pair_dist, core::scoring::custom_atom_pair, core::scoring::orbitals_hpol_bb,
  core::scoring::pci_cation_pi, core::scoring::pci_pi_pi, core::scoring::pci_salt_bridge, core::scoring::pci_hbond,
  core::scoring::arg_cation_pi, core::scoring::python, core::scoring::n_ci_2b_score_types = python, core::scoring::fa_pair,
  core::scoring::fa_pair_aro_aro, core::scoring::fa_pair_aro_pol, core::scoring::fa_pair_pol_pol, core::scoring::hbond_sr_bb,
  core::scoring::hbond_lr_bb, core::scoring::hbond_bb_sc, core::scoring::hbond_sr_bb_sc, core::scoring::hbond_lr_bb_sc,
  core::scoring::hbond_sc, core::scoring::hbond_intra, core::scoring::hbond_wat, core::scoring::wat_entropy,
  core::scoring::hbond, core::scoring::npd_hbond_sr_bb, core::scoring::npd_hbond_lr_bb, core::scoring::npd_hbond_bb_sc,
  core::scoring::npd_hbond_sr_bb_sc, core::scoring::npd_hbond_lr_bb_sc, core::scoring::npd_hbond_sc, core::scoring::npd_hbond_intra,
  core::scoring::npd_hbond, core::scoring::fa_grpelec, core::scoring::interface_dd_pair, core::scoring::geom_sol,
  core::scoring::geom_sol_intra_RNA, core::scoring::occ_sol_fitted, core::scoring::occ_sol_fitted_onebody, core::scoring::occ_sol_exact,
  core::scoring::cen_rot_pair, core::scoring::cen_rot_pair_ang, core::scoring::cen_rot_pair_dih, core::scoring::pair,
  core::scoring::cen_pair_smooth, core::scoring::Mpair, core::scoring::MPPair, core::scoring::FaMPSolv,
  core::scoring::suck, core::scoring::rna_rg, core::scoring::rna_motif, core::scoring::facts_elec,
  core::scoring::facts_solv, core::scoring::facts_sasa, core::scoring::motif_dock, core::scoring::pointwater,
  core::scoring::goap, core::scoring::goap_dist, core::scoring::goap_angle, core::scoring::approximate_buried_unsat_penalty,
  core::scoring::interchain_pair, core::scoring::interchain_vdw, core::scoring::n_shortranged_2b_score_types = interchain_vdw, core::scoring::gb_elec,
  core::scoring::multipole_elec, core::scoring::fa_sasa, core::scoring::dslf_ss_dst, core::scoring::dslf_cs_ang,
  core::scoring::dslf_ss_dih, core::scoring::dslf_ca_dih, core::scoring::dslf_cbs_ds, core::scoring::dslf_fa13,
  core::scoring::dslfc_cen_dst, core::scoring::dslfc_cb_dst, core::scoring::dslfc_ang, core::scoring::dslfc_cb_dih,
  core::scoring::dslfc_bb_dih, core::scoring::dslfc_rot, core::scoring::dslfc_trans, core::scoring::dslfc_RT,
  core::scoring::atom_pair_constraint, core::scoring::base_pair_constraint, core::scoring::coarse_chainbreak_constraint, core::scoring::constant_constraint,
  core::scoring::coordinate_constraint, core::scoring::angle_constraint, core::scoring::dihedral_constraint, core::scoring::big_bin_constraint,
  core::scoring::dunbrack_constraint, core::scoring::site_constraint, core::scoring::metalhash_constraint, core::scoring::metalbinding_constraint,
  core::scoring::rna_stub_coord_hack, core::scoring::bond_geometry, core::scoring::rna_bond_geometry, core::scoring::Hpol_bond_geometry,
  core::scoring::rama, core::scoring::omega, core::scoring::fa_dun, core::scoring::fa_dun_dev,
  core::scoring::fa_dun_rot, core::scoring::fa_dun_semi, core::scoring::cen_rot_dun, core::scoring::dna_chi,
  core::scoring::p_aa_pp, core::scoring::p_aa_ss, core::scoring::yhh_planarity, core::scoring::hxl_tors,
  core::scoring::h2o_intra, core::scoring::ref, core::scoring::ref_nc, core::scoring::seqdep_ref,
  core::scoring::nmer_ref, core::scoring::nmer_pssm, core::scoring::nmer_svm, core::scoring::envsmooth,
  core::scoring::e_pH, core::scoring::rna_bulge, core::scoring::dna_dihedral_bb, core::scoring::dna_dihedral_chi,
  core::scoring::dna_dihedral_sugar, core::scoring::sugar_bb, core::scoring::free_suite, core::scoring::free_2HOprime,
  core::scoring::free_side_chain, core::scoring::free_base, core::scoring::free_res, core::scoring::free_dof,
  core::scoring::intermol, core::scoring::other_pose, core::scoring::special_rot, core::scoring::PB_elec,
  core::scoring::cen_env_smooth, core::scoring::cbeta_smooth, core::scoring::cen_rot_env, core::scoring::cen_rot_cbeta,
  core::scoring::env, core::scoring::cbeta, core::scoring::DFIRE, core::scoring::Menv,
  core::scoring::Mcbeta, core::scoring::Menv_non_helix, core::scoring::Menv_termini, core::scoring::Menv_tm_proj,
  core::scoring::Mlipo, core::scoring::rg, core::scoring::rg_local, core::scoring::co,
  core::scoring::hs_pair, core::scoring::ss_pair, core::scoring::rsigma, core::scoring::sheet,
  core::scoring::burial_v2, core::scoring::burial, core::scoring::abego, core::scoring::covalent_labeling,
  core::scoring::covalent_labeling_fa, core::scoring::hrf_ms_labeling, core::scoring::hrf_dynamics, core::scoring::rnp_env,
  core::scoring::loop_close, core::scoring::missing_res, core::scoring::MPEnv, core::scoring::MPCbeta,
  core::scoring::MPLipo, core::scoring::MPTermini, core::scoring::MPNonHelix, core::scoring::MPTMProj,
  core::scoring::FaMPEnv, core::scoring::FaMPEnvSmooth, core::scoring::fa_water_to_bilayer, core::scoring::MPResidueLipophilicity,
  core::scoring::span_ins, core::scoring::mp_span_ang, core::scoring::MPHelicality, core::scoring::natbias_ss,
  core::scoring::natbias_hs, core::scoring::natbias_hh, core::scoring::natbias_stwist, core::scoring::aa_cmp,
  core::scoring::dock_ens_conf, core::scoring::csa, core::scoring::dc, core::scoring::rdc,
  core::scoring::rdc_segments, core::scoring::rdc_rohl, core::scoring::nmr_pcs, core::scoring::nmr_rdc,
  core::scoring::nmr_pre, core::scoring::cen_pair_motifs, core::scoring::cen_pair_motif_degree, core::scoring::holes,
  core::scoring::holes_decoy, core::scoring::holes_resl, core::scoring::holes_min, core::scoring::holes_min_mean,
  core::scoring::rna_chem_shift, core::scoring::rna_chem_map, core::scoring::rna_chem_map_lores, core::scoring::rna_partition,
  core::scoring::dab_sasa, core::scoring::dab_sev, core::scoring::sa, core::scoring::d2h_sa,
  core::scoring::ProQM, core::scoring::ProQ, core::scoring::interchain_env, core::scoring::interchain_contact,
  core::scoring::chainbreak, core::scoring::linear_chainbreak, core::scoring::overlap_chainbreak, core::scoring::distance_chainbreak,
  core::scoring::dof_constraint, core::scoring::branch_conn, core::scoring::linear_branch_conn, core::scoring::rama_prepro,
  core::scoring::paa_abego3, core::scoring::cart_bonded, core::scoring::cart_bonded_angle, core::scoring::cart_bonded_length,
  core::scoring::cart_bonded_ring, core::scoring::cart_bonded_torsion, core::scoring::cart_bonded_proper, core::scoring::cart_bonded_improper,
  core::scoring::gen_bonded, core::scoring::gen_bonded_bond, core::scoring::gen_bonded_angle, core::scoring::gen_bonded_torsion,
  core::scoring::gen_bonded_improper, core::scoring::neigh_vect, core::scoring::neigh_count, core::scoring::neigh_vect_raw,
  core::scoring::symE_bonus, core::scoring::sym_lig, core::scoring::mhc_epitope, core::scoring::pack_stat,
  core::scoring::rms, core::scoring::res_type_constraint, core::scoring::res_type_linking_constraint, core::scoring::pocket_constraint,
  core::scoring::backbone_stub_constraint, core::scoring::backbone_stub_linear_constraint, core::scoring::surface, core::scoring::p_aa,
  core::scoring::unfolded, core::scoring::split_unfolded_two_body, core::scoring::fa_atr_ref, core::scoring::fa_rep_ref,
  core::scoring::fa_sol_ref, core::scoring::fa_elec_ref, core::scoring::hbond_ref, core::scoring::dslf_fa13_ref,
  core::scoring::fa_intra_atr_ref, core::scoring::fa_intra_rep_ref, core::scoring::fa_intra_sol_ref, core::scoring::pro_close_ref,
  core::scoring::fa_dun_ref, core::scoring::fa_dun_dev_ref, core::scoring::fa_dun_rot_ref, core::scoring::fa_dun_semi_ref,
  core::scoring::rama_ref, core::scoring::p_aa_pp_ref, core::scoring::omega_ref, core::scoring::mm_lj_intra_rep_ref,
  core::scoring::mm_lj_intra_atr_ref, core::scoring::mm_twist_ref, core::scoring::elec_dens_fast, core::scoring::elec_dens_window,
  core::scoring::elec_dens_whole_structure_ca, core::scoring::elec_dens_whole_structure_allatom, core::scoring::elec_dens_atomwise, core::scoring::grid_vdw,
  core::scoring::xtal_ml, core::scoring::xtal_rwork, core::scoring::xtal_rfree, core::scoring::hpatch,
  core::scoring::Menv_smooth, core::scoring::wat_desolv, core::scoring::ring_close, core::scoring::aa_repeat,
  core::scoring::aa_composition, core::scoring::aspartimide_penalty, core::scoring::hbnet, core::scoring::buried_unsatisfied_penalty,
  core::scoring::netcharge, core::scoring::voids_penalty, core::scoring::sap_constraint, core::scoring::dna_env,
  core::scoring::dna_pair, core::scoring::dump_trajectory, core::scoring::sidechain_neighbors, core::scoring::target_clash,
  core::scoring::membrane_span_constraint, core::scoring::membrane_span_term_z_constraint, core::scoring::aromatic_restraint, core::scoring::total_score,
  core::scoring::dummy_score_type, core::scoring::n_score_types = dummy_score_type, core::scoring::end_of_score_type_enumeration = dummy_score_type
}
 Type for looking up cached energies. More...
 

Functions

ScoreType core::scoring::score_type_from_name (std::string const &name)
 give a ScoreType string name and return its enum type More...
 
std::string core::scoring::name_from_score_type (ScoreType score_type)
 Returns the name of the ScoreType <score_type> More...
 
std::istream & core::scoring::operator>> (std::istream &is, ScoreType &score_type)
 input operator for ScoreType enum type More...
 
std::ostream & core::scoring::operator<< (std::ostream &os, ScoreType const &score_type)
 output operator for ScoreType enum type More...
 
std::ostream & core::scoring::operator<< (std::ostream &os, ScoreTypes const &score_types)
 output operator for ScoreTypes list type More...
 

Detailed Description

Score type enumeration.

Author
Phil Bradley