Rosetta  2021.16
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Namespaces | Functions
util.cc File Reference
#include <protocols/stepwise/modeler/align/util.hh>
#include <protocols/stepwise/modeler/align/StepWisePoseAligner.hh>
#include <protocols/stepwise/modeler/protein/util.hh>
#include <protocols/stepwise/modeler/rna/util.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <core/pose/Pose.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/pose/util.hh>
#include <utility/exit.hh>
#include <utility/stream_util.hh>
#include <core/scoring/rms_util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/stepwise.OptionKeys.gen.hh>
#include <basic/Tracer.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::stepwise
 
 protocols::stepwise::modeler
 
 protocols::stepwise::modeler::align
 

Functions

static basic::Tracer TR ("protocols.stepwise.modeler.align.util")
 
core::Real protocols::stepwise::modeler::align::get_rmsd (core::pose::Pose const &pose1, core::pose::Pose const &pose2, utility::vector1< core::Size > const &calc_rms_res, bool const check_align_at_superimpose_res, bool const check_switch)
 
core::Real protocols::stepwise::modeler::align::get_rmsd (core::pose::Pose const &pose1, core::pose::Pose const &pose2, bool const check_align_at_superimpose_res, bool const check_switch)
 
void protocols::stepwise::modeler::align::align_pose_and_add_rmsd_constraints (pose::Pose &pose, pose::PoseCOP align_pose, utility::vector1< core::Size > const &moving_res_list, Real const rmsd_screen)
 
Real protocols::stepwise::modeler::align::superimpose_with_stepwise_aligner (pose::Pose &pose, pose::Pose const &align_pose, bool const superimpose_over_all_instantiated)
 
Real protocols::stepwise::modeler::align::superimpose_pose_legacy (pose::Pose &mod_pose, pose::Pose const &ref_pose, std::map< core::Size, core::Size > const &res_map)
 Superimpose mod_pose onto ref_pose using the mapping of residues from mod_pose to ref_pose given by res_map. Simple wrapper around superimpose_pose using IDs. More...
 
id::AtomID_Map< id::AtomIDprotocols::stepwise::modeler::align::create_alignment_id_map_legacy (pose::Pose const &mod_pose, pose::Pose const &ref_pose, utility::vector1< core::Size > const &superimpose_res)
 
id::AtomID_Map< id::AtomIDprotocols::stepwise::modeler::align::create_alignment_id_map_legacy (pose::Pose const &mod_pose, pose::Pose const &ref_pose, std::map< core::Size, core::Size > res_map)
 

Detailed Description

Author
Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu

Function Documentation

static basic::Tracer TR ( "protocols.stepwise.modeler.align.util"  )
static