Rosetta  2020.37
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Public Types | Public Member Functions | Static Public Member Functions | Private Attributes | List of all members
protocols::task_operations::DesignAroundOperation Class Reference

#include <DesignAroundOperation.hh>

Inheritance diagram for protocols::task_operations::DesignAroundOperation:
Inheritance graph
[legend]

Public Types

typedef RestrictOperationsBase parent
 
- Public Types inherited from protocols::task_operations::RestrictOperationsBase
typedef
core::pack::task::operation::TaskOperation 
TaskOperation
 
typedef
core::pack::task::operation::TaskOperationOP 
TaskOperationOP
 
typedef TaskOperation parent
 
- Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 
typedef pose::Pose Pose
 

Public Member Functions

 DesignAroundOperation ()
 
void design_shell (core::Real const radius)
 
core::Real design_shell () const
 
void include_residue (core::Size const resid)
 
 ~DesignAroundOperation () override
 
TaskOperationOP clone () const override
 Create another task operation of the type matching the most-derived version of the class. More...
 
void apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
 restricts to repacking all residues outside of design_shell_ around each residue More...
 
void parse_tag (TagCOP, DataMap &) override
 Used to parse an xml-like tag to load parameters and properties. More...
 
void repack_shell (core::Real const repack_shell)
 
core::Real repack_shell () const
 
void allow_design (bool const a)
 
bool allow_design () const
 
void resnums_allow_design (bool const a)
 
bool resnums_allow_design () const
 
std::set< core::Sizeget_designable_residues () const
 
- Public Member Functions inherited from protocols::task_operations::RestrictOperationsBase
 RestrictOperationsBase ()
 
 ~RestrictOperationsBase () override
 
- Public Member Functions inherited from core::pack::task::operation::TaskOperation
 ~TaskOperation () override
 
virtual bool task_operation_provides_citation_info () const
 Does this task operation provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool task_operation_is_unpublished () const
 Does this task_operation indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 
static std::string keyname ()
 

Private Attributes

core::Real design_shell_
 
core::Real repack_shell_
 
bool allow_design_
 
bool resnums_allow_design_
 
std::set< core::Sizeresid_
 
std::string string_resnums_
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::task_operations::RestrictOperationsBase
void run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
 this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::task_operations::DesignAroundOperation::DesignAroundOperation ( )

References resid_.

protocols::task_operations::DesignAroundOperation::~DesignAroundOperation ( )
overridedefault

Member Function Documentation

void protocols::task_operations::DesignAroundOperation::allow_design ( bool const  a)
inline
bool protocols::task_operations::DesignAroundOperation::allow_design ( ) const
inline

References allow_design_.

Referenced by apply(), and parse_tag().

void protocols::task_operations::DesignAroundOperation::apply ( core::pose::Pose const &  pose,
core::pack::task::PackerTask task 
) const
overridevirtual
core::pack::task::operation::TaskOperationOP protocols::task_operations::DesignAroundOperation::clone ( ) const
overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::task_operations::RestrictOperationsBase.

void protocols::task_operations::DesignAroundOperation::design_shell ( core::Real const  radius)
core::Real protocols::task_operations::DesignAroundOperation::design_shell ( ) const
inline

References design_shell_.

Referenced by apply(), parse_tag(), and repack_shell().

std::set< core::Size > protocols::task_operations::DesignAroundOperation::get_designable_residues ( ) const
inline
void protocols::task_operations::DesignAroundOperation::include_residue ( core::Size const  resid)

References resid_.

static std::string protocols::task_operations::DesignAroundOperation::keyname ( )
inlinestatic
void protocols::task_operations::DesignAroundOperation::parse_tag ( TagCOP  tag,
DataMap  
)
overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References allow_design(), design_shell(), repack_shell(), resnums_allow_design(), string_resnums_, and protocols::task_operations::TR().

void protocols::task_operations::DesignAroundOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::task_operations::DesignAroundOperation::repack_shell ( core::Real const  repack_shell)
inline
core::Real protocols::task_operations::DesignAroundOperation::repack_shell ( ) const
inline

References repack_shell_.

Referenced by apply(), design_shell(), parse_tag(), and repack_shell().

void protocols::task_operations::DesignAroundOperation::resnums_allow_design ( bool const  a)
inline
bool protocols::task_operations::DesignAroundOperation::resnums_allow_design ( ) const
inline

References resnums_allow_design_.

Referenced by apply(), and parse_tag().

Member Data Documentation

bool protocols::task_operations::DesignAroundOperation::allow_design_
private

Referenced by allow_design().

core::Real protocols::task_operations::DesignAroundOperation::design_shell_
private

Referenced by design_shell(), and repack_shell().

core::Real protocols::task_operations::DesignAroundOperation::repack_shell_
private

Referenced by design_shell(), and repack_shell().

std::set< core::Size > protocols::task_operations::DesignAroundOperation::resid_
private
bool protocols::task_operations::DesignAroundOperation::resnums_allow_design_
private

Referenced by resnums_allow_design().

std::string protocols::task_operations::DesignAroundOperation::string_resnums_
private

Referenced by apply(), and parse_tag().


The documentation for this class was generated from the following files: