core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator Class Reference

#include <InterfaceDefinitionCalculatorBase.hh>

Inheritance diagram for core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator:

Public Member Functions
	InterfaceDefinitionCalculator (core::Size const chain1_number, core::Size const chain2_number)
	InterfaceDefinitionCalculator (char const chain1_letter, char const chain2_letter)
core::pose::metrics::PoseMetricCalculatorOP	clone () const override=0
Public Member Functions inherited from core::pose::metrics::StructureDependentCalculator
	StructureDependentCalculator ()
void	notify_structure_change () override
void	get (std::string const &key, basic::MetricValueBase &val, Pose const &this_pose) override
std::string	get (std::string const &key, Pose const &this_pose) override
Public Member Functions inherited from core::pose::metrics::PoseMetricCalculator
	PoseMetricCalculator ()
virtual void	notify_energy_change ()

Protected Member Functions
std::string	print (std::string const &key) const override=0
void	lookup (std::string const &key, basic::MetricValueBase *valptr) const override=0
void	recompute (core::pose::Pose const &this_pose) override=0
virtual void	verify_chain_setup (core::pose::Pose const &pose)
virtual core::Size	chain_letter_to_number (core::pose::Pose const &pose, char const chain_id)
virtual void	fill_in_chain_terminii (core::pose::Pose const &pose)

Protected Attributes
core::Size	ch1_begin_num_
core::Size	ch1_end_num_
core::Size	ch2_begin_num_
core::Size	ch2_end_num_
core::Size	chain1_number_
core::Size	chain2_number_
char	chain1_letter_
char	chain2_letter_
bool	got_chain_numbers_

Constructor & Destructor Documentation

InterfaceDefinitionCalculator() [1/2]

core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator::InterfaceDefinitionCalculator	(	core::Size const	chain1_number,
		core::Size const	chain2_number
	)

InterfaceDefinitionCalculator() [2/2]

core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator::InterfaceDefinitionCalculator	(	char const	chain1_letter,
		char const	chain2_letter
	)

Member Function Documentation

chain_letter_to_number()

Size core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator::chain_letter_to_number ( core::pose::Pose const &  pose, char const  chain_id  )

protectedvirtual

References core::pose::Pose::chain(), core::pose::Pose::pdb_info(), and core::pose::Pose::size().

Referenced by verify_chain_setup().

clone()

core::pose::metrics::PoseMetricCalculatorOP core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator::clone ( ) const

overridepure virtual

Implements core::pose::metrics::PoseMetricCalculator.

Implemented in core::pose::metrics::simple_calculators::InterfaceSasaDefinitionCalculator, and core::pose::metrics::simple_calculators::InterfaceNeighborDefinitionCalculator.

fill_in_chain_terminii()

void core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator::fill_in_chain_terminii ( core::pose::Pose const &  pose )

protectedvirtual

References ch1_begin_num_, ch1_end_num_, ch2_begin_num_, ch2_end_num_, chain1_number_, chain2_number_, core::conformation::Conformation::chain_begin(), core::conformation::Conformation::chain_end(), and core::pose::Pose::conformation().

Referenced by verify_chain_setup().

lookup()

void core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator::lookup ( std::string const &  key, basic::MetricValueBase *  valptr  ) const

overrideprotectedpure virtual

Implements core::pose::metrics::StructureDependentCalculator.

Implemented in core::pose::metrics::simple_calculators::InterfaceSasaDefinitionCalculator, and core::pose::metrics::simple_calculators::InterfaceNeighborDefinitionCalculator.

print()

std::string core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator::print ( std::string const &  key ) const

overrideprotectedpure virtual

Implements core::pose::metrics::StructureDependentCalculator.

Implemented in core::pose::metrics::simple_calculators::InterfaceSasaDefinitionCalculator, and core::pose::metrics::simple_calculators::InterfaceNeighborDefinitionCalculator.

recompute()

void core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator::recompute ( core::pose::Pose const &  this_pose )

overrideprotectedpure virtual

Implements core::pose::metrics::StructureDependentCalculator.

Implemented in core::pose::metrics::simple_calculators::InterfaceSasaDefinitionCalculator, and core::pose::metrics::simple_calculators::InterfaceNeighborDefinitionCalculator.

verify_chain_setup()

void core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator::verify_chain_setup ( core::pose::Pose const &  pose )

protectedvirtual

References chain1_letter_, chain1_number_, chain2_letter_, chain2_number_, chain_letter_to_number(), fill_in_chain_terminii(), and got_chain_numbers_.

Member Data Documentation

ch1_begin_num_

core::Size core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator::ch1_begin_num_

protected

Referenced by fill_in_chain_terminii().

ch1_end_num_

core::Size core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator::ch1_end_num_

protected

Referenced by fill_in_chain_terminii().

ch2_begin_num_

core::Size core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator::ch2_begin_num_

protected

Referenced by fill_in_chain_terminii().

ch2_end_num_

core::Size core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator::ch2_end_num_

protected

Referenced by fill_in_chain_terminii().

chain1_letter_

char core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator::chain1_letter_

protected

Referenced by verify_chain_setup().

chain1_number_

core::Size core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator::chain1_number_

protected

Referenced by core::pose::metrics::simple_calculators::InterfaceNeighborDefinitionCalculator::clone(), core::pose::metrics::simple_calculators::InterfaceSasaDefinitionCalculator::clone(), fill_in_chain_terminii(), and verify_chain_setup().

chain2_letter_

char core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator::chain2_letter_

protected

Referenced by verify_chain_setup().

chain2_number_

core::Size core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator::chain2_number_

protected

Referenced by core::pose::metrics::simple_calculators::InterfaceNeighborDefinitionCalculator::clone(), core::pose::metrics::simple_calculators::InterfaceSasaDefinitionCalculator::clone(), fill_in_chain_terminii(), and verify_chain_setup().

got_chain_numbers_

bool core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator::got_chain_numbers_

protected

Referenced by verify_chain_setup().

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The documentation for this class was generated from the following files:

• src/core/pose/metrics/simple_calculators/InterfaceDefinitionCalculatorBase.hh
• src/core/pose/metrics/simple_calculators/InterfaceDefinitionCalculatorBase.cc