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Public Member Functions | Static Public Member Functions | Private Attributes | List of all members
protocols::hbnet::HBNetScore Class Reference

#include <HBNetScore.hh>

Inheritance diagram for protocols::hbnet::HBNetScore:
Inheritance graph
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Public Member Functions

 HBNetScore ()
 
 HBNetScore (protocols::filters::Filter const &)
 
 HBNetScore (HBNetScore const &)
 
 ~HBNetScore () override
 
protocols::filters::FilterOP clone () const override
 
protocols::filters::FilterOP fresh_instance () const override
 
void report (std::ostream &, core::pose::Pose const &) const override
 
core::Real report_sm (core::pose::Pose const &pose) const override
 just returns get_score() More...
 
bool apply (core::pose::Pose const &pose) const override
 Returns true if the given pose passes the filter, false otherwise. More...
 
core::Real score (core::pose::Pose &pose) override
 just returns get_score() More...
 
core::Real get_score (core::pose::Pose &pose) const
 
std::string name () const override
 
void clear () override
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
 ~Filter () override
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Attributes

core::Real threshold_
 
core::Real hbond_threshold_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Constructor & Destructor Documentation

protocols::hbnet::HBNetScore::HBNetScore ( )
protocols::hbnet::HBNetScore::HBNetScore ( protocols::filters::Filter const &  src)
protocols::hbnet::HBNetScore::HBNetScore ( HBNetScore const &  src)
protocols::hbnet::HBNetScore::~HBNetScore ( )
overridedefault

Member Function Documentation

bool protocols::hbnet::HBNetScore::apply ( core::pose::Pose const &  pose) const
overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References report_sm(), and threshold_.

void protocols::hbnet::HBNetScore::clear ( )
inlineoverridevirtual

used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual

Reimplemented from protocols::filters::Filter.

References hbond_threshold_, and threshold_.

protocols::filters::FilterOP protocols::hbnet::HBNetScore::clone ( ) const
inlineoverridevirtual

Implements protocols::filters::Filter.

Referenced by report_sm().

protocols::filters::FilterOP protocols::hbnet::HBNetScore::fresh_instance ( ) const
inlineoverridevirtual
core::Real protocols::hbnet::HBNetScore::get_score ( core::pose::Pose pose) const
std::string protocols::hbnet::HBNetScore::name ( ) const
inlineoverridevirtual

Reimplemented from protocols::filters::Filter.

Referenced by HBNetScore().

void protocols::hbnet::HBNetScore::parse_my_tag ( utility::tag::TagCOP  ,
basic::datacache::DataMap &   
)
overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References hbond_threshold_, and threshold_.

void protocols::hbnet::HBNetScore::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::hbnet::HBNetScore::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References report_sm().

core::Real protocols::hbnet::HBNetScore::report_sm ( core::pose::Pose const &  pose) const
inlineoverridevirtual

just returns get_score()

Reimplemented from protocols::filters::Filter.

References clone(), core::pose::Pose::clone(), and get_score().

Referenced by apply(), and report().

core::Real protocols::hbnet::HBNetScore::score ( core::pose::Pose pose)
inlineoverridevirtual

just returns get_score()

Reimplemented from protocols::filters::Filter.

References get_score().

Member Data Documentation

core::Real protocols::hbnet::HBNetScore::hbond_threshold_
private

Referenced by clear(), get_score(), and parse_my_tag().

core::Real protocols::hbnet::HBNetScore::threshold_
private

Referenced by apply(), clear(), and parse_my_tag().


The documentation for this class was generated from the following files: