Rosetta: protocols::hbnet::HBNetScore Class Reference

Rosetta

#include <HBNetScore.hh>

Inheritance diagram for protocols::hbnet::HBNetScore:

Inheritance graph

[legend]

Public Member Functions
	HBNetScore ()

	HBNetScore (protocols::filters::Filter const &)

	HBNetScore (HBNetScore const &)

	~HBNetScore () override

protocols::filters::FilterOP	clone () const override

protocols::filters::FilterOP	fresh_instance () const override

void	report (std::ostream &, core::pose::Pose const &) const override

core::Real	report_sm (core::pose::Pose const &pose) const override
	just returns get_score() More...

bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...

core::Real	score (core::pose::Pose &pose) override
	just returns get_score() More...

core::Real	get_score (core::pose::Pose &pose) const

std::string	name () const override

void	clear () override
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	~Filter () override

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::Real	threshold_

core::Real	hbond_threshold_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

◆ HBNetScore() [1/3]

protocols::hbnet::HBNetScore::HBNetScore ( )

References name(), and protocols::filters::Filter::scorename_.

◆ HBNetScore() [2/3]

protocols::hbnet::HBNetScore::HBNetScore ( protocols::filters::Filter const & src )

◆ HBNetScore() [3/3]

protocols::hbnet::HBNetScore::HBNetScore ( HBNetScore const & src )

References name(), and protocols::filters::Filter::scorename_.

◆ ~HBNetScore()

protocols::hbnet::HBNetScore::~HBNetScore ( )

overridedefault

Member Function Documentation

◆ apply()

bool protocols::hbnet::HBNetScore::apply ( core::pose::Pose const & pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References report_sm(), and threshold_.

◆ clear()

void protocols::hbnet::HBNetScore::clear ( )

inlineoverridevirtual

used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual

Reimplemented from protocols::filters::Filter.

References hbond_threshold_, and threshold_.

◆ clone()

protocols::filters::FilterOP protocols::hbnet::HBNetScore::clone ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

Referenced by report_sm().

◆ fresh_instance()

protocols::filters::FilterOP protocols::hbnet::HBNetScore::fresh_instance ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

◆ get_score()

core::Real protocols::hbnet::HBNetScore::get_score ( core::pose::Pose & pose ) const

References core::select::residue_selector::ResiduePDBInfoHasLabelSelector::apply(), protocols::simple_filters::BuriedUnsatHbondFilter::compute(), core::scoring::hbond, hbond_threshold_, and core::pose::Pose::size().

Referenced by report_sm(), and score().

◆ name()

std::string protocols::hbnet::HBNetScore::name ( ) const

inlineoverridevirtual

Reimplemented from protocols::filters::Filter.

Referenced by HBNetScore().

◆ parse_my_tag()

void protocols::hbnet::HBNetScore::parse_my_tag	(	utility::tag::TagCOP	,
		basic::datacache::DataMap &
	)

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References hbond_threshold_, and threshold_.

◆ provide_xml_schema()

void protocols::hbnet::HBNetScore::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::hbnet::HBNetScoreFilterCreator::provide_xml_schema().

◆ report()

void protocols::hbnet::HBNetScore::report	(	std::ostream &	out,
		core::pose::Pose const &	pose
	)		const

overridevirtual

Reimplemented from protocols::filters::Filter.

References core::conformation::membrane::out, and report_sm().

◆ report_sm()

core::Real protocols::hbnet::HBNetScore::report_sm ( core::pose::Pose const & pose ) const

inlineoverridevirtual

just returns get_score()

Reimplemented from protocols::filters::Filter.

References core::pose::Pose::clone(), clone(), and get_score().

Referenced by apply(), and report().

◆ score()

core::Real protocols::hbnet::HBNetScore::score ( core::pose::Pose & pose )

inlineoverridevirtual

just returns get_score()

Reimplemented from protocols::filters::Filter.

References get_score().

Member Data Documentation

◆ hbond_threshold_

core::Real protocols::hbnet::HBNetScore::hbond_threshold_

private

Referenced by clear(), get_score(), and parse_my_tag().

◆ threshold_

core::Real protocols::hbnet::HBNetScore::threshold_

private

Referenced by apply(), clear(), and parse_my_tag().

The documentation for this class was generated from the following files:

src/protocols/hbnet/HBNetScore.hh
src/protocols/hbnet/HBNetScore.cc