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StepWiseMasterMover.cc File Reference
#include <protocols/stepwise/monte_carlo/mover/StepWiseMasterMover.hh>
#include <protocols/stepwise/monte_carlo/mover/AddMover.hh>
#include <protocols/stepwise/monte_carlo/mover/DeleteMover.hh>
#include <protocols/stepwise/monte_carlo/mover/FromScratchMover.hh>
#include <protocols/stepwise/monte_carlo/mover/AddOrDeleteMover.hh>
#include <protocols/stepwise/monte_carlo/mover/ResampleMover.hh>
#include <protocols/stepwise/monte_carlo/mover/StepWiseMoveSelector.hh>
#include <protocols/stepwise/monte_carlo/mover/VaryLoopLengthMover.hh>
#include <protocols/stepwise/monte_carlo/options/StepWiseMonteCarloOptions.hh>
#include <protocols/stepwise/monte_carlo/util.hh>
#include <protocols/stepwise/modeler/precomputed/PrecomputedLibraryMover.hh>
#include <protocols/stepwise/modeler/StepWiseModeler.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <protocols/magnesium/MgMonteCarlo.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/variant_util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/pose/full_model_info/util.hh>
#include <core/id/AtomID.hh>
#include <numeric/random/random.hh>
#include <basic/Tracer.hh>
#include <basic/random/init_random_generator.hh>
#include <fstream>
#include <utility/file/file_sys_util.hh>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <core/import_pose/pose_stream/SilentFilePoseInputStream.hh>
#include <core/import_pose/pose_stream/PDBPoseInputStream.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::stepwise
 
 protocols::stepwise::monte_carlo
 
 protocols::stepwise::monte_carlo::mover
 

Functions

static basic::Tracer TR ("protocols.stepwise.monte_carlo.mover.StepWiseMasterMover")
 
std::string protocols::stepwise::monte_carlo::mover::name_from_move (StepWiseMove const &stepwise_move, Pose const &start_pose)
 
std::string protocols::stepwise::monte_carlo::mover::residue_rebuild_log_namer (core::Size const resample_round, core::Size const nstruct)
 
std::string protocols::stepwise::monte_carlo::mover::residue_rebuild_checkpoint_namer (core::Size const resample_round, core::Size const nstruct)
 
void protocols::stepwise::monte_carlo::mover::read_checkpoint_log (utility::vector1< StepWiseMove > &stepwise_moves, core::Size &start_idx, core::Size const resample_round, core::Size const nstruct, Pose const &start_pose)
 
void protocols::stepwise::monte_carlo::mover::write_checkpoint (utility::vector1< StepWiseMove > const &stepwise_moves, core::Size const start_idx, core::Size const resample_round, core::Size const nstruct, Pose const &output_pose)
 
void protocols::stepwise::monte_carlo::mover::ensure_appropriate_foldtree_for_move (StepWiseMove const &stepwise_move, Pose &output_pose, core::kinematics::FoldTree &ft_to_restore)
 
void protocols::stepwise::monte_carlo::mover::set_up_params_for_move (pose::Pose &output_pose, StepWiseMove const &stepwise_move)
 
modeler::StepWiseModelerOP protocols::stepwise::monte_carlo::mover::setup_unified_stepwise_modeler (protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptionsCOP mc_options, core::scoring::ScoreFunctionCOP scorefxn)
 

Detailed Description

Author
Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu

Function Documentation

static basic::Tracer TR ( "protocols.stepwise.monte_carlo.mover.StepWiseMasterMover"  )
static