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core::pack::task::PackerTask Member List

This is the complete list of members for core::pack::task::PackerTask, including all inherited members.

AA typedefcore::pack::task::PackerTask
add_behavior(std::string const &behavior)=0core::pack::task::PackerTaskpure virtual
add_behavior(std::string const &behavior, Size resid)=0core::pack::task::PackerTaskpure virtual
adducts(Size resid) const =0core::pack::task::PackerTaskpure virtual
and_linmem_ig(bool setting)=0core::pack::task::PackerTaskpure virtual
and_max_rotbump_energy(Real setting)=0core::pack::task::PackerTaskpure virtual
append_rotamer_operation(rotamer_set::RotamerOperationOP rotop)=0core::pack::task::PackerTaskpure virtual
append_rotamerset_operation(rotamer_set::RotamerSetOperationOP rotsetop)=0core::pack::task::PackerTaskpure virtual
append_rotamersets_operation(rotamer_set::RotamerSetsOperationOP rotsetsop)=0core::pack::task::PackerTaskpure virtual
being_designed(Size resid) const =0core::pack::task::PackerTaskpure virtual
being_packed(Size resid) const =0core::pack::task::PackerTaskpure virtual
bump_check() const =0core::pack::task::PackerTaskpure virtual
clean_residue_task(conformation::Residue const &original_residue, Size const seqpos, core::pose::Pose const &pose)=0core::pack::task::PackerTaskpure virtual
clone() const =0core::pack::task::PackerTaskpure virtual
decrease_double_lazy_ig_memlimit(Size nbytes_for_rpes)=0core::pack::task::PackerTaskpure virtual
decrease_linmem_ig_history_size(Size setting)=0core::pack::task::PackerTaskpure virtual
design_any() const =0core::pack::task::PackerTaskpure virtual
design_residue(int resid) const =0core::pack::task::PackerTaskpure virtual
designing_residues() const =0core::pack::task::PackerTaskpure virtual
disallow_quench(bool const &disallow_quench)=0core::pack::task::PackerTaskpure virtual
disallow_quench() const =0core::pack::task::PackerTaskpure virtual
double_lazy_ig() const =0core::pack::task::PackerTaskpure virtual
double_lazy_ig_memlimit() const =0core::pack::task::PackerTaskpure virtual
get_self_ptr() const core::pack::task::PackerTaskinline
get_self_ptr()core::pack::task::PackerTaskinline
has_behavior(std::string const &behavior, Size resid) const =0core::pack::task::PackerTaskpure virtual
has_behavior(Size resid) const =0core::pack::task::PackerTaskpure virtual
high_temp(Real const &high_temp)=0core::pack::task::PackerTaskpure virtual
high_temp() const =0core::pack::task::PackerTaskpure virtual
ig_threads_to_request() const =0core::pack::task::PackerTaskpure virtual
IGEdgeReweights() const =0core::pack::task::PackerTaskpure virtual
include_current(Size resid) const =0core::pack::task::PackerTaskpure virtual
increase_multi_cool_annealer_history_size(Size setting)=0core::pack::task::PackerTaskpure virtual
initialize_extra_rotamer_flags_from_command_line()=0core::pack::task::PackerTaskpure virtual
initialize_extra_rotamer_flags_from_options(utility::options::OptionCollection const &options)=0core::pack::task::PackerTaskpure virtual
initialize_from_command_line()=0core::pack::task::PackerTaskpure virtual
initialize_from_options(utility::options::OptionCollection const &options)=0core::pack::task::PackerTaskpure virtual
is_initialized() const =0core::pack::task::PackerTaskpure virtual
keep_sequence_symmetry() const =0core::pack::task::PackerTaskpure virtual
keep_sequence_symmetry(bool const setting)=0core::pack::task::PackerTaskpure virtual
lazy_ig() const =0core::pack::task::PackerTaskpure virtual
limit_ig_setup_threads(core::Size const setting)=0core::pack::task::PackerTaskpure virtual
linmem_ig() const =0core::pack::task::PackerTaskpure virtual
linmem_ig_history_size() const =0core::pack::task::PackerTaskpure virtual
list_options_read(utility::options::OptionKeyList &read_options)core::pack::task::PackerTaskstatic
low_temp(Real const &low_temp)=0core::pack::task::PackerTaskpure virtual
low_temp() const =0core::pack::task::PackerTaskpure virtual
max_rotbump_energy() const =0core::pack::task::PackerTaskpure virtual
multi_cool_annealer() const =0core::pack::task::PackerTaskpure virtual
multi_cool_annealer_history_size() const =0core::pack::task::PackerTaskpure virtual
nonconst_residue_task(Size resid)=0core::pack::task::PackerTaskpure virtual
num_to_be_packed() const =0core::pack::task::PackerTaskpure virtual
operator<<(std::ostream &os, PackerTask const &t)core::pack::task::PackerTaskfriend
or_adducts(bool setting)=0core::pack::task::PackerTaskpure virtual
or_adducts(bool setting, Size resid)=0core::pack::task::PackerTaskpure virtual
or_double_lazy_ig(bool setting)=0core::pack::task::PackerTaskpure virtual
or_fix_his_tautomer(utility::vector1< int > const &positions, bool setting)=0core::pack::task::PackerTaskpure virtual
or_flip_HNQ(bool setting)=0core::pack::task::PackerTaskpure virtual
or_include_current(bool setting)=0core::pack::task::PackerTaskpure virtual
or_include_current(bool setting, Size resid)=0core::pack::task::PackerTaskpure virtual
or_lazy_ig(bool setting)=0core::pack::task::PackerTaskpure virtual
or_linmem_ig(bool setting)=0core::pack::task::PackerTaskpure virtual
or_multi_cool_annealer(bool setting)=0core::pack::task::PackerTaskpure virtual
or_optimize_h_mode(bool setting)=0core::pack::task::PackerTaskpure virtual
or_precompute_ig(bool setting)=0core::pack::task::PackerTaskpure virtual
or_preserve_c_beta(bool setting)=0core::pack::task::PackerTaskpure virtual
pack_residue(int resid) const =0core::pack::task::PackerTaskpure virtual
precompute_ig() const =0core::pack::task::PackerTaskpure virtual
remap_residue_level_tasks(core::id::SequenceMappingCOP seqmap, core::pose::Pose const &pose)=0core::pack::task::PackerTaskpure virtual
repacking_residues() const =0core::pack::task::PackerTaskpure virtual
request_symmetrize_by_intersection()=0core::pack::task::PackerTaskpure virtual
request_symmetrize_by_union()=0core::pack::task::PackerTaskpure virtual
residue_task(Size resid) const =0core::pack::task::PackerTaskpure virtual
restrict_to_repacking()=0core::pack::task::PackerTaskpure virtual
restrict_to_residues(utility::vector1< bool > const &residues_allowed_to_be_packed)=0core::pack::task::PackerTaskpure virtual
rotamer_couplings() const =0core::pack::task::PackerTaskpure virtual
rotamer_couplings(RotamerCouplingsCOP setting)=0core::pack::task::PackerTaskpure virtual
rotamer_couplings_exist() const =0core::pack::task::PackerTaskpure virtual
rotamer_links() const =0core::pack::task::PackerTaskpure virtual
rotamer_links(RotamerLinksCOP setting)=0core::pack::task::PackerTaskpure virtual
rotamer_links_exist() const =0core::pack::task::PackerTaskpure virtual
rotamer_sets_operation_begin() const =0core::pack::task::PackerTaskpure virtual
rotamer_sets_operation_end() const =0core::pack::task::PackerTaskpure virtual
RotamerCouplingsCOP typedefcore::pack::task::PackerTask
RotamerLinksCOP typedefcore::pack::task::PackerTask
set_bump_check(bool setting)=0core::pack::task::PackerTaskpure virtual
set_IGEdgeReweights()=0core::pack::task::PackerTaskpure virtual
set_smart_annealer(bool setting)=0core::pack::task::PackerTaskpure virtual
set_smart_annealer_cutoff(core::Real setting)=0core::pack::task::PackerTaskpure virtual
set_smart_annealer_disable_during_quench(bool setting)=0core::pack::task::PackerTaskpure virtual
set_smart_annealer_model(std::string const &setting)=0core::pack::task::PackerTaskpure virtual
set_smart_annealer_pick_again(bool setting)=0core::pack::task::PackerTaskpure virtual
show(std::ostream &out) const =0core::pack::task::PackerTaskpure virtual
show() const =0core::pack::task::PackerTaskpure virtual
show_all_residue_tasks(std::ostream &out) const =0core::pack::task::PackerTaskpure virtual
show_all_residue_tasks() const =0core::pack::task::PackerTaskpure virtual
show_residue_task(std::ostream &out, Size resid) const =0core::pack::task::PackerTaskpure virtual
show_residue_task(Size resid) const =0core::pack::task::PackerTaskpure virtual
smart_annealer() const =0core::pack::task::PackerTaskpure virtual
smart_annealer_cutoff() const =0core::pack::task::PackerTaskpure virtual
smart_annealer_disable_during_quench() const =0core::pack::task::PackerTaskpure virtual
smart_annealer_model() const =0core::pack::task::PackerTaskpure virtual
smart_annealer_pick_again() const =0core::pack::task::PackerTaskpure virtual
symmetrize_by_intersection() const =0core::pack::task::PackerTaskpure virtual
symmetrize_by_union() const =0core::pack::task::PackerTaskpure virtual
task_string(pose::Pose const &pose) const =0core::pack::task::PackerTaskpure virtual
temporarily_fix_everything()=0core::pack::task::PackerTaskpure virtual
temporarily_set_pack_residue(int resid, bool setting)=0core::pack::task::PackerTaskpure virtual
total_residue() const =0core::pack::task::PackerTaskpure virtual
update_commutative(PackerTask const &to_copy)=0core::pack::task::PackerTaskpure virtual