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core::pack::scmin Namespace Reference

Classes

class  AtomTreeCollection
 A collection of ResidueAtomTreeCollection objects for an entire design task. More...
 
class  AtomTreeSCMinMinimizerMap
 
class  CartSCMinMinimizerMap
 
class  CartSCMinMultifunc
 
class  ResidueAtomTreeCollection
 The conformation::Residues and kinematics::AtomTrees for a single collection of rotamers (e.g. a RotamerSet). Each chemical::ResidueType gets its own residue/atomtree pair. A particular AtomTree/Residue pair can be set as "active" and manipulated by setter and getters for either the coordinates of the Residues or the chi dihedrals of the AtomTree. More...
 
class  ResidueAtomTreeCollectionMomento
 Class to save the state for a ResidueAtomTreeCollection. More...
 
class  SCMinMinimizerMap
 
class  SCMinMultifunc
 
class  SidechainStateAssignment
 A simple class for tracking a network state and its energy where each sidechain's state is described by a series of chi angles. More...
 

Typedefs

typedef
utility::pointer::shared_ptr
< ResidueAtomTreeCollectionMomento
ResidueAtomTreeCollectionMomentoOP
 
typedef
utility::pointer::shared_ptr
< ResidueAtomTreeCollectionMomento
const > 
ResidueAtomTreeCollectionMomentoCOP
 
typedef
utility::pointer::shared_ptr
< ResidueAtomTreeCollection
ResidueAtomTreeCollectionOP
 
typedef
utility::pointer::shared_ptr
< ResidueAtomTreeCollection
const > 
ResidueAtomTreeCollectionCOP
 
typedef
utility::pointer::shared_ptr
< AtomTreeCollection
AtomTreeCollectionOP
 
typedef
utility::pointer::shared_ptr
< AtomTreeCollection const > 
AtomTreeCollectionCOP
 
typedef
utility::pointer::shared_ptr
< AtomTreeSCMinMinimizerMap
AtomTreeSCMinMinimizerMapOP
 
typedef
utility::pointer::shared_ptr
< AtomTreeSCMinMinimizerMap
const > 
AtomTreeSCMinMinimizerMapCOP
 
typedef
utility::pointer::shared_ptr
< CartSCMinMinimizerMap
CartSCMinMinimizerMapOP
 
typedef
utility::pointer::shared_ptr
< CartSCMinMinimizerMap const > 
CartSCMinMinimizerMapCOP
 
typedef
utility::pointer::shared_ptr
< CartSCMinMultifunc
CartSCMinMultifuncOP
 
typedef
utility::pointer::shared_ptr
< CartSCMinMultifunc
CartSCMinMultifuncCOP
 
typedef
utility::pointer::shared_ptr
< SCMinMinimizerMap
SCMinMinimizerMapOP
 
typedef
utility::pointer::shared_ptr
< SCMinMinimizerMap const > 
SCMinMinimizerMapCOP
 
typedef
utility::pointer::shared_ptr
< SCMinMultifunc
SCMinMultifuncOP
 
typedef
utility::pointer::shared_ptr
< SCMinMultifunc
SCMinMultifuncCOP
 
typedef
utility::pointer::shared_ptr
< SidechainStateAssignment
SidechainStateAssignmentOP
 
typedef
utility::pointer::shared_ptr
< SidechainStateAssignment
const > 
SidechainStateAssignmentCOP
 

Functions

optimization::DOF_NodeOP dummy_nodeop (new optimization::DOF_Node(id::DOF_ID(), nullptr))
 
static basic::Tracer TR ("core.pack.scmin.SCMinMultifunc")
 

Variables

optimization::DOF_NodeOP dummy_nodeop
 

Typedef Documentation

typedef utility::pointer::shared_ptr< AtomTreeCollection const > core::pack::scmin::AtomTreeCollectionCOP
typedef utility::pointer::shared_ptr< AtomTreeCollection > core::pack::scmin::AtomTreeCollectionOP
typedef utility::pointer::shared_ptr< AtomTreeSCMinMinimizerMap const > core::pack::scmin::AtomTreeSCMinMinimizerMapCOP
typedef utility::pointer::shared_ptr< CartSCMinMinimizerMap const > core::pack::scmin::CartSCMinMinimizerMapCOP
typedef utility::pointer::shared_ptr< CartSCMinMinimizerMap > core::pack::scmin::CartSCMinMinimizerMapOP
typedef utility::pointer::shared_ptr< CartSCMinMultifunc > core::pack::scmin::CartSCMinMultifuncCOP
typedef utility::pointer::shared_ptr< CartSCMinMultifunc > core::pack::scmin::CartSCMinMultifuncOP
typedef utility::pointer::shared_ptr< ResidueAtomTreeCollection const > core::pack::scmin::ResidueAtomTreeCollectionCOP
typedef utility::pointer::shared_ptr< SCMinMinimizerMap const > core::pack::scmin::SCMinMinimizerMapCOP
typedef utility::pointer::shared_ptr< SCMinMinimizerMap > core::pack::scmin::SCMinMinimizerMapOP
typedef utility::pointer::shared_ptr< SCMinMultifunc > core::pack::scmin::SCMinMultifuncCOP
typedef utility::pointer::shared_ptr< SCMinMultifunc > core::pack::scmin::SCMinMultifuncOP
typedef utility::pointer::shared_ptr< SidechainStateAssignment const > core::pack::scmin::SidechainStateAssignmentCOP

Function Documentation

optimization::DOF_NodeOP core::pack::scmin::dummy_nodeop ( new optimization::  DOF_Nodeid::DOF_ID(), nullptr)
static basic::Tracer core::pack::scmin::TR ( "core.pack.scmin.SCMinMultifunc"  )
static

Variable Documentation

optimization::DOF_NodeOP core::pack::scmin::dummy_nodeop