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core::pack::scmin Namespace Reference

Classes

class  ResidueAtomTreeCollectionMomento
 Class to save the state for a ResidueAtomTreeCollection. More...
 
class  ResidueAtomTreeCollection
 The conformation::Residues and kinematics::AtomTrees for a single collection of rotamers (e.g. a RotamerSet). Each chemical::ResidueType gets its own residue/atomtree pair. A particular AtomTree/Residue pair can be set as "active" and manipulated by setter and getters for either the coordinates of the Residues or the chi dihedrals of the AtomTree. More...
 
class  AtomTreeCollection
 A collection of ResidueAtomTreeCollection objects for an entire design task. More...
 
class  AtomTreeSCMinMinimizerMap
 
class  CartSCMinMinimizerMap
 
class  CartSCMinMultifunc
 
class  SCMinMinimizerMap
 
class  SCMinMultifunc
 
class  SidechainStateAssignment
 A simple class for tracking a network state and its energy where each sidechain's state is described by a series of chi angles. More...
 

Typedefs

typedef utility::pointer::shared_ptr< ResidueAtomTreeCollectionMomentoResidueAtomTreeCollectionMomentoOP
 
typedef utility::pointer::shared_ptr< ResidueAtomTreeCollectionMomento const > ResidueAtomTreeCollectionMomentoCOP
 
typedef utility::pointer::shared_ptr< ResidueAtomTreeCollectionResidueAtomTreeCollectionOP
 
typedef utility::pointer::shared_ptr< ResidueAtomTreeCollection const > ResidueAtomTreeCollectionCOP
 
typedef utility::pointer::shared_ptr< AtomTreeCollectionAtomTreeCollectionOP
 
typedef utility::pointer::shared_ptr< AtomTreeCollection const > AtomTreeCollectionCOP
 
typedef utility::pointer::shared_ptr< AtomTreeSCMinMinimizerMapAtomTreeSCMinMinimizerMapOP
 
typedef utility::pointer::shared_ptr< AtomTreeSCMinMinimizerMap const > AtomTreeSCMinMinimizerMapCOP
 
typedef utility::pointer::shared_ptr< CartSCMinMinimizerMapCartSCMinMinimizerMapOP
 
typedef utility::pointer::shared_ptr< CartSCMinMinimizerMap const > CartSCMinMinimizerMapCOP
 
typedef utility::pointer::shared_ptr< CartSCMinMultifuncCartSCMinMultifuncOP
 
typedef utility::pointer::shared_ptr< CartSCMinMultifuncCartSCMinMultifuncCOP
 
typedef utility::pointer::shared_ptr< SCMinMinimizerMapSCMinMinimizerMapOP
 
typedef utility::pointer::shared_ptr< SCMinMinimizerMap const > SCMinMinimizerMapCOP
 
typedef utility::pointer::shared_ptr< SCMinMultifuncSCMinMultifuncOP
 
typedef utility::pointer::shared_ptr< SCMinMultifuncSCMinMultifuncCOP
 
typedef utility::pointer::shared_ptr< SidechainStateAssignmentSidechainStateAssignmentOP
 
typedef utility::pointer::shared_ptr< SidechainStateAssignment const > SidechainStateAssignmentCOP
 

Functions

optimization::DOF_NodeOP dummy_nodeop (new optimization::DOF_Node(id::DOF_ID(), nullptr))
 
static basic::Tracer TR ("core.pack.scmin.SCMinMultifunc")
 

Variables

optimization::DOF_NodeOP dummy_nodeop
 

Typedef Documentation

◆ AtomTreeCollectionCOP

typedef utility::pointer::shared_ptr< AtomTreeCollection const > core::pack::scmin::AtomTreeCollectionCOP

◆ AtomTreeCollectionOP

typedef utility::pointer::shared_ptr< AtomTreeCollection > core::pack::scmin::AtomTreeCollectionOP

◆ AtomTreeSCMinMinimizerMapCOP

typedef utility::pointer::shared_ptr< AtomTreeSCMinMinimizerMap const > core::pack::scmin::AtomTreeSCMinMinimizerMapCOP

◆ AtomTreeSCMinMinimizerMapOP

◆ CartSCMinMinimizerMapCOP

typedef utility::pointer::shared_ptr< CartSCMinMinimizerMap const > core::pack::scmin::CartSCMinMinimizerMapCOP

◆ CartSCMinMinimizerMapOP

typedef utility::pointer::shared_ptr< CartSCMinMinimizerMap > core::pack::scmin::CartSCMinMinimizerMapOP

◆ CartSCMinMultifuncCOP

typedef utility::pointer::shared_ptr< CartSCMinMultifunc > core::pack::scmin::CartSCMinMultifuncCOP

◆ CartSCMinMultifuncOP

typedef utility::pointer::shared_ptr< CartSCMinMultifunc > core::pack::scmin::CartSCMinMultifuncOP

◆ ResidueAtomTreeCollectionCOP

typedef utility::pointer::shared_ptr< ResidueAtomTreeCollection const > core::pack::scmin::ResidueAtomTreeCollectionCOP

◆ ResidueAtomTreeCollectionMomentoCOP

◆ ResidueAtomTreeCollectionMomentoOP

◆ ResidueAtomTreeCollectionOP

◆ SCMinMinimizerMapCOP

typedef utility::pointer::shared_ptr< SCMinMinimizerMap const > core::pack::scmin::SCMinMinimizerMapCOP

◆ SCMinMinimizerMapOP

typedef utility::pointer::shared_ptr< SCMinMinimizerMap > core::pack::scmin::SCMinMinimizerMapOP

◆ SCMinMultifuncCOP

typedef utility::pointer::shared_ptr< SCMinMultifunc > core::pack::scmin::SCMinMultifuncCOP

◆ SCMinMultifuncOP

typedef utility::pointer::shared_ptr< SCMinMultifunc > core::pack::scmin::SCMinMultifuncOP

◆ SidechainStateAssignmentCOP

typedef utility::pointer::shared_ptr< SidechainStateAssignment const > core::pack::scmin::SidechainStateAssignmentCOP

◆ SidechainStateAssignmentOP

Function Documentation

◆ dummy_nodeop()

optimization::DOF_NodeOP core::pack::scmin::dummy_nodeop ( new   optimization::DOF_Nodeid::DOF_ID(), nullptr)

◆ TR()

static basic::Tracer core::pack::scmin::TR ( "core.pack.scmin.SCMinMultifunc"  )
static

Variable Documentation

◆ dummy_nodeop

optimization::DOF_NodeOP core::pack::scmin::dummy_nodeop
extern