#include <ScorePoseSegmentFromResidueSelectorFilter.hh>
Public Member Functions | |
| ScorePoseSegmentFromResidueSelectorFilter () | |
| ~ScorePoseSegmentFromResidueSelectorFilter () override | |
| protocols::filters::FilterOP | clone () const override |
| protocols::filters::FilterOP | fresh_instance () const override |
| void | residue_selector (core::select::residue_selector::ResidueSelectorCOP const &select) |
| void | residue_selector (core::select::residue_selector::ResidueSelector const &select) |
| core::scoring::ScoreFunctionOP | scorefxn () const |
| void | scorefxn (core::scoring::ScoreFunctionOP const &scorefxn) |
| std::string | score_id_name () const |
| void | score_id_name (std::string name) |
| bool | in_context () const |
| void | in_context (bool pick) |
| bool | apply (core::pose::Pose const &pose) const override |
| Returns true if the given pose passes the filter, false otherwise. More... | |
| void | report (std::ostream &out, core::pose::Pose const &pose) const override |
| core::Real | report_sm (core::pose::Pose const &pose) const override |
| used to report filter internals through a score or silent file More... | |
| core::Real | compute (core::pose::Pose const &pose) const |
| void | parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data_map) override |
| Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More... | |
| std::string | name () const override |
 Public Member Functions inherited from protocols::filters::Filter | |
| Filter () | |
| Filter (std::string const &) | |
| ~Filter () override | |
| virtual std::string | get_type () const |
| std::string | get_user_defined_name () const |
| void | set_user_defined_name (std::string const &name) |
| virtual void | clear () |
| used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More... | |
| virtual core::Real | score (core::pose::Pose &pose) |
| virtual void | provide_citation_info (basic::citation_manager::CitationCollectionList &) const |
| Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More... | |
Static Public Member Functions | |
| static std::string | class_name () |
| static void | provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd) |
Static Private Member Functions | |
| static core::select::residue_selector::ResidueSelectorCOP | default_selector () |
| static core::scoring::ScoreFunctionOP | default_scorefxn () |
Private Attributes | |
| std::string | score_id_name_ |
| core::select::residue_selector::ResidueSelectorCOP | residue_select_ |
| core::scoring::ScoreFunctionOP | scorefxn_ |
| bool | in_context_ |
Additional Inherited Members | |
| Protected Attributes inherited from protocols::filters::Filter | |
| std::string | scorename_ |
Constructor & Destructor Documentation
◆ ScorePoseSegmentFromResidueSelectorFilter()
| protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::ScorePoseSegmentFromResidueSelectorFilter | ( | ) |
◆ ~ScorePoseSegmentFromResidueSelectorFilter()
|
override |
Member Function Documentation
◆ apply()
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overridevirtual |
Returns true if the given pose passes the filter, false otherwise.
Implements protocols::filters::Filter.
References compute(), protocols::filters::Filter::score(), and protocols::fold_from_loops::filters::TR().
◆ class_name()
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inlinestatic |
◆ clone()
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inlineoverridevirtual |
Implements protocols::filters::Filter.
◆ compute()
| core::Real protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::compute | ( | core::pose::Pose const & | pose | ) | const |
References protocols::grafting::simple_movers::DeleteRegionMover::apply(), core::pose::Pose::conformation(), core::pose::Pose::conformation_ptr(), core::pose::Pose::detached_copy(), core::conformation::Conformation::detect_disulfides(), core::pose::Pose::energies(), in_context_, core::pose::Pose::remove_constraints(), residue_select_, core::scoring::Energies::residue_total_energy(), protocols::filters::Filter::score(), core::pose::Pose::set_new_conformation(), protocols::grafting::simple_movers::DeleteRegionMover::set_residue_selector(), and core::pose::Pose::size().
Referenced by apply(), report(), and report_sm().
◆ default_scorefxn()
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inlinestaticprivate |
References core::scoring::get_score_function().
◆ default_selector()
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inlinestaticprivate |
◆ fresh_instance()
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inlineoverridevirtual |
Implements protocols::filters::Filter.
◆ in_context() [1/2]
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inline |
References in_context_.
Referenced by parse_my_tag().
◆ in_context() [2/2]
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inline |
References in_context_.
◆ name()
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inlineoverridevirtual |
Reimplemented from protocols::filters::Filter.
References class_name().
Referenced by score_id_name().
◆ parse_my_tag()
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overridevirtual |
Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.
Reimplemented from protocols::filters::Filter.
References core::select::residue_selector::get_residue_selector(), in_context(), core::scoring::parse_score_function(), residue_selector(), score_id_name(), and scorefxn().
◆ provide_xml_schema()
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static |
References core::select::residue_selector::attributes_for_parse_residue_selector_when_required(), core::scoring::attributes_for_parse_score_function_w_description(), class_name(), core::id::to_string(), and protocols::filters::xsd_type_definition_w_attributes().
Referenced by protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilterCreator::provide_xml_schema().
◆ report()
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overridevirtual |
Reimplemented from protocols::filters::Filter.
References compute(), core::conformation::membrane::out, and protocols::filters::Filter::score().
◆ report_sm()
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overridevirtual |
used to report filter internals through a score or silent file
Reimplemented from protocols::filters::Filter.
References compute(), and protocols::filters::Filter::score().
◆ residue_selector() [1/2]
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inline |
References core::select::residue_selector::ResidueSelector::clone(), and residue_select_.
◆ residue_selector() [2/2]
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inline |
References residue_select_.
Referenced by parse_my_tag().
◆ score_id_name() [1/2]
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inline |
References score_id_name_.
Referenced by parse_my_tag().
◆ score_id_name() [2/2]
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inline |
References name(), and score_id_name_.
◆ scorefxn() [1/2]
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inline |
References scorefxn_.
Referenced by parse_my_tag().
◆ scorefxn() [2/2]
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inline |
References scorefxn(), and scorefxn_.
Referenced by scorefxn().
Member Data Documentation
◆ in_context_
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private |
Referenced by compute(), and in_context().
◆ residue_select_
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private |
Referenced by compute(), and residue_selector().
◆ score_id_name_
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private |
Referenced by score_id_name().
◆ scorefxn_
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private |
Referenced by scorefxn().
The documentation for this class was generated from the following files:
- src/protocols/fold_from_loops/filters/ScorePoseSegmentFromResidueSelectorFilter.hh
- src/protocols/fold_from_loops/filters/ScorePoseSegmentFromResidueSelectorFilter.cc
