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protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter Class Reference

#include <ScorePoseSegmentFromResidueSelectorFilter.hh>

Inheritance diagram for protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter:
Inheritance graph
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Public Member Functions

 ScorePoseSegmentFromResidueSelectorFilter ()
 
 ~ScorePoseSegmentFromResidueSelectorFilter () override
 
protocols::filters::FilterOP clone () const override
 
protocols::filters::FilterOP fresh_instance () const override
 
void residue_selector (core::select::residue_selector::ResidueSelectorCOP const &select)
 
void residue_selector (core::select::residue_selector::ResidueSelector const &select)
 
core::scoring::ScoreFunctionOP scorefxn () const
 
void scorefxn (core::scoring::ScoreFunctionOP const &scorefxn)
 
std::string score_id_name () const
 
void score_id_name (std::string name)
 
bool in_context () const
 
void in_context (bool pick)
 
bool apply (core::pose::Pose const &pose) const override
 Returns true if the given pose passes the filter, false otherwise. More...
 
void report (std::ostream &out, core::pose::Pose const &pose) const override
 
core::Real report_sm (core::pose::Pose const &pose) const override
 used to report filter internals through a score or silent file More...
 
core::Real compute (core::pose::Pose const &pose) const
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data_map) override
 Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
 
std::string name () const override
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
 ~Filter () override
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Static Private Member Functions

static
core::select::residue_selector::ResidueSelectorCOP 
default_selector ()
 
static
core::scoring::ScoreFunctionOP 
default_scorefxn ()
 

Private Attributes

std::string score_id_name_
 
core::select::residue_selector::ResidueSelectorCOP residue_select_
 
core::scoring::ScoreFunctionOP scorefxn_
 
bool in_context_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Constructor & Destructor Documentation

protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::ScorePoseSegmentFromResidueSelectorFilter ( )
protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::~ScorePoseSegmentFromResidueSelectorFilter ( )
override

Member Function Documentation

bool protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::apply ( core::pose::Pose const &  pose) const
overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), protocols::filters::Filter::score(), and protocols::fold_from_loops::filters::TR().

static std::string protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::class_name ( )
inlinestatic
protocols::filters::FilterOP protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::clone ( ) const
inlineoverridevirtual
core::Real protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::compute ( core::pose::Pose const &  pose) const
static core::scoring::ScoreFunctionOP protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::default_scorefxn ( )
inlinestaticprivate
static core::select::residue_selector::ResidueSelectorCOP protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::default_selector ( )
inlinestaticprivate
protocols::filters::FilterOP protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::fresh_instance ( ) const
inlineoverridevirtual
bool protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::in_context ( ) const
inline

References in_context_.

Referenced by parse_my_tag().

void protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::in_context ( bool  pick)
inline

References in_context_.

std::string protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::name ( ) const
inlineoverridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

Referenced by score_id_name().

void protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::parse_my_tag ( utility::tag::TagCOP  ,
basic::datacache::DataMap &   
)
overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References core::select::residue_selector::get_residue_selector(), in_context(), core::scoring::parse_score_function(), residue_selector(), score_id_name(), and scorefxn().

void protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
overridevirtual
core::Real protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::report_sm ( core::pose::Pose const &  ) const
overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute(), and protocols::filters::Filter::score().

void protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::residue_selector ( core::select::residue_selector::ResidueSelectorCOP const &  select)
inline

References residue_select_.

Referenced by parse_my_tag().

void protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::residue_selector ( core::select::residue_selector::ResidueSelector const &  select)
inline
std::string protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::score_id_name ( ) const
inline

References score_id_name_.

Referenced by parse_my_tag().

void protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::score_id_name ( std::string  name)
inline

References name(), and score_id_name_.

core::scoring::ScoreFunctionOP protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::scorefxn ( ) const
inline

References scorefxn_.

Referenced by parse_my_tag().

void protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::scorefxn ( core::scoring::ScoreFunctionOP const &  scorefxn)
inline

References scorefxn(), and scorefxn_.

Referenced by scorefxn().

Member Data Documentation

bool protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::in_context_
private

Referenced by compute(), and in_context().

core::select::residue_selector::ResidueSelectorCOP protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::residue_select_
private

Referenced by compute(), and residue_selector().

std::string protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::score_id_name_
private

Referenced by score_id_name().

core::scoring::ScoreFunctionOP protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::scorefxn_
private

Referenced by scorefxn().


The documentation for this class was generated from the following files: