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protocols::jd2::archive::EvaluatedArchive Member List

This is the complete list of members for protocols::jd2::archive::EvaluatedArchive, including all inherited members.

AbstractArchiveBase(BaseArchiveManagerAP ptr)protocols::jd2::archive::AbstractArchiveBaseinline
AbstractArchiveBase()protocols::jd2::archive::AbstractArchiveBaseinline
acceptance_history_protocols::jd2::archive::ArchiveBaseprivate
AcceptHistoryQueue typedefprotocols::jd2::archive::ArchiveBaseprivate
accepts_since_last_batch()protocols::jd2::archive::ArchiveBaseinline
accepts_since_last_batch() constprotocols::jd2::archive::ArchiveBaseinline
accepts_since_last_batch_protocols::jd2::archive::ArchiveBaseprivate
add_evaluated_structure(core::io::silent::SilentStructOP evaluated_decoy, core::io::silent::SilentStructOP alternative_decoy, Batch const &)protocols::jd2::archive::EvaluatedArchivevirtual
add_evaluation(evaluation::PoseEvaluatorCOP, core::Real weight=0.0)protocols::jd2::archive::EvaluatedArchive
add_structure(core::io::silent::SilentStructOP new_decoy, core::io::silent::SilentStructOP alternative_decoy, Batch const &batch) overrideprotocols::jd2::archive::EvaluatedArchivevirtual
add_structure_at_position(SilentStructs::iterator iss, core::io::silent::SilentStructOP new_decoy, core::io::silent::SilentStructOP alternative_decoy)protocols::jd2::archive::ArchiveBaseprotectedvirtual
ArchiveBase(ArchiveManagerAP ptr=nullptr)protocols::jd2::archive::ArchiveBase
b_evaluate_incoming_decoys_protocols::jd2::archive::EvaluatedArchiveprivate
const_decoy_iterator typedefprotocols::jd2::archive::ArchiveBaseprotected
count_removed_structures(core::Size n_removed)protocols::jd2::archive::ArchiveBaseprotected
count_structure(Batch const &batch, bool accepted)protocols::jd2::archive::ArchiveBaseprotectedvirtual
current_acceptance_ratio() constprotocols::jd2::archive::ArchiveBaseinline
decoy_iterator typedefprotocols::jd2::archive::ArchiveBaseprotected
decoys() constprotocols::jd2::archive::ArchiveBaseinline
decoys()protocols::jd2::archive::ArchiveBaseinline
decoys_protocols::jd2::archive::ArchiveBaseprivate
dummy_score_variations_protocols::jd2::archive::EvaluatedArchiveprivate
erase_decoy(std::string const &tag)protocols::jd2::archive::ArchiveBaseprotectedvirtual
evaluate_local() constprotocols::jd2::archive::EvaluatedArchiveinline
evaluate_pose(core::io::silent::SilentStructOP result, core::pose::Pose &input_pose) constprotocols::jd2::archive::EvaluatedArchiveprivatevirtual
evaluate_silent_struct(core::io::silent::SilentStructOP from_batch) constprotocols::jd2::archive::EvaluatedArchive
EvaluatedArchive(ArchiveManagerAP ptr)protocols::jd2::archive::EvaluatedArchive
EvaluatedArchive()protocols::jd2::archive::EvaluatedArchive
EvaluatorMap typedefprotocols::jd2::archive::EvaluatedArchive
evaluators() constprotocols::jd2::archive::EvaluatedArchiveinline
evaluators_protocols::jd2::archive::EvaluatedArchiveprivate
finished() const overrideprotocols::jd2::archive::ArchiveBaseinlinevirtual
floating_acceptance_ratio_protocols::jd2::archive::ArchiveBaseprivate
generate_batch() override=0protocols::jd2::archive::ArchiveBasepure virtual
protocols::jd2::archive::AbstractArchiveBase::generate_batch(jd2::archive::Batch &, core::Size)protocols::jd2::archive::AbstractArchiveBaseinlinevirtual
get_weight(std::string const &column) constprotocols::jd2::archive::EvaluatedArchive
has_evaluator(std::string const &column)protocols::jd2::archive::EvaluatedArchive
idle() overrideprotocols::jd2::archive::ArchiveBaseinlinevirtual
init_from_decoy_set(core::io::silent::SilentFileData const &sfd) override=0protocols::jd2::archive::EvaluatedArchivepure virtual
initialize() overrideprotocols::jd2::archive::ArchiveBaseinlinevirtual
invalidate_score_variations()protocols::jd2::archive::EvaluatedArchiveinlineprotectedvirtual
load_decoys(std::string const &filename, SilentStructs &decoys)protocols::jd2::archive::ArchiveBase
manager()protocols::jd2::archive::AbstractArchiveBaseinline
manager_protocols::jd2::archive::AbstractArchiveBaseprivate
manager_ptr()protocols::jd2::archive::AbstractArchiveBaseinlineprotected
max_nstruct()protocols::jd2::archive::ArchiveBaseinlineprotected
max_nstruct_protocols::jd2::archive::ArchiveBaseprivate
min_structures_for_acceptance_statistics_protocols::jd2::archive::ArchiveBaseprivate
name() constprotocols::jd2::archive::AbstractArchiveBaseinline
name_protocols::jd2::archive::AbstractArchiveBaseprivate
nstruct() constprotocols::jd2::archive::ArchiveBaseinline
nstruct_protocols::jd2::archive::ArchiveBaseprivate
options_registered_protocols::jd2::archive::EvaluatedArchiveprivatestatic
Parent typedefprotocols::jd2::archive::EvaluatedArchiveprivate
proposed_since_last_batch() constprotocols::jd2::archive::ArchiveBaseinline
proposed_since_last_batch_protocols::jd2::archive::ArchiveBaseprivate
read_structures(core::io::silent::SilentFileData &sfd, core::io::silent::SilentFileData &alternative_decoys, Batch const &batch) overrideprotocols::jd2::archive::EvaluatedArchivevirtual
register_options()protocols::jd2::archive::EvaluatedArchivestatic
remove_evaluation(std::string const &column)protocols::jd2::archive::EvaluatedArchive
rescore()protocols::jd2::archive::EvaluatedArchivevirtual
reset_accept_counter()protocols::jd2::archive::ArchiveBaseinline
restore_from_file() overrideprotocols::jd2::archive::EvaluatedArchivevirtual
restore_status(std::istream &)protocols::jd2::archive::ArchiveBasevirtual
save_decoys(std::string const &dirname, std::string const &name, SilentStructs const &decoys)protocols::jd2::archive::ArchiveBase
save_status(std::ostream &) const overrideprotocols::jd2::archive::ArchiveBasevirtual
save_to_file(std::string suffix="") overrideprotocols::jd2::archive::EvaluatedArchivevirtual
score(core::pose::Pose &pose) constprotocols::jd2::archive::EvaluatedArchiveprotectedvirtual
score_variation(std::string const &col) constprotocols::jd2::archive::EvaluatedArchivevirtual
score_variations() constprotocols::jd2::archive::EvaluatedArchivevirtual
scorefxn() constprotocols::jd2::archive::EvaluatedArchive
scorefxn_protocols::jd2::archive::EvaluatedArchiveprivate
scorefxn_non_const()protocols::jd2::archive::EvaluatedArchiveprotected
scores_are_clean_protocols::jd2::archive::EvaluatedArchivemutableprivate
select_score(core::io::silent::SilentStructOP evaluated_decoy)protocols::jd2::archive::EvaluatedArchive
select_weights_protocols::jd2::archive::EvaluatedArchiveprivate
set_evaluate_local(bool setting)protocols::jd2::archive::EvaluatedArchiveinline
set_evaluators(EvaluatorMap const &, WeightMap const &)protocols::jd2::archive::EvaluatedArchive
set_manager(BaseArchiveManagerAP manager)protocols::jd2::archive::AbstractArchiveBaseinlinevirtual
set_max_nstruct(core::Size setting)protocols::jd2::archive::ArchiveBaseinlineprotected
set_name(std::string const &set)protocols::jd2::archive::AbstractArchiveBaseinline
set_nstruct(core::Size set)protocols::jd2::archive::ArchiveBaseinline
set_scorefxn(core::scoring::ScoreFunctionOP scorefxn_)protocols::jd2::archive::EvaluatedArchive
set_weight(std::string const &column, core::Real weight)protocols::jd2::archive::EvaluatedArchive
set_weights(WeightMap const &setting)protocols::jd2::archive::EvaluatedArchive
setup_default_evaluators()protocols::jd2::archive::EvaluatedArchive
SilentStructs typedefprotocols::jd2::archive::ArchiveBaseprotected
sort()protocols::jd2::archive::EvaluatedArchiveprivate
SOURCE_FILEprotocols::jd2::archive::ArchiveBaseprotectedstatic
start_eval_time_protocols::jd2::archive::EvaluatedArchivemutableprivate
start_evaluation_timer() constprotocols::jd2::archive::EvaluatedArchive
statistics_valid()protocols::jd2::archive::ArchiveBaseinline
still_interested(jd2::archive::Batch const &) constprotocols::jd2::archive::AbstractArchiveBaseinlinevirtual
TAG_IN_FILEprotocols::jd2::archive::ArchiveBaseprotectedstatic
total_accepts()protocols::jd2::archive::ArchiveBaseinline
total_accepts_protocols::jd2::archive::ArchiveBaseprivate
total_proposed()protocols::jd2::archive::ArchiveBaseinline
total_proposed_protocols::jd2::archive::ArchiveBaseprivate
variance_archive_protocols::jd2::archive::EvaluatedArchiveprivate
WeightMap typedefprotocols::jd2::archive::EvaluatedArchive
weights() constprotocols::jd2::archive::EvaluatedArchiveinline
~AbstractArchiveBase() overrideprotocols::jd2::archive::AbstractArchiveBase
~ArchiveBase() overrideprotocols::jd2::archive::ArchiveBase
~EvaluatedArchive() overrideprotocols::jd2::archive::EvaluatedArchive