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core::pack::hbonds::BareMinimumPDEdge Member List

This is the complete list of members for core::pack::hbonds::BareMinimumPDEdge, including all inherited members.

acknowledge_state_change(int node_ind, int new_state, SparseMatrixIndex const &new_state_sparse_info, core::PackerEnergy &new_energy)core::pack::interaction_graph::PDEdge
acknowledge_state_zeroed(int node_ind)core::pack::interaction_graph::PDEdge
acknowledge_substitution(int substituted_node_index, core::PackerEnergy const curr_state_energy, int nodes_new_state, SparseMatrixIndex const &nodes_new_state_sparse_info)core::pack::interaction_graph::PDEdgeinline
add_to_two_body_energies(ObjexxFCL::FArray2< PackerEnergy > const &res_res_energy_array) overridecore::pack::hbonds::BareMinimumPDEdge
core::pack::interaction_graph::PDEdge::add_to_two_body_energies(ObjexxFCL::FArray2< core::PackerEnergy > const &res_res_energy_array) overridecore::pack::interaction_graph::PDEdgevirtual
add_to_two_body_energy(int const, int const, PackerEnergy const) overridecore::pack::hbonds::BareMinimumPDEdgevirtual
BareMinimumPDEdge(interaction_graph::InteractionGraphBase *owner, int first_node_ind, int second_node_ind)core::pack::hbonds::BareMinimumPDEdge
clear_two_body_energy(int const, int const) overridecore::pack::hbonds::BareMinimumPDEdgeinlinevirtual
count_dynamic_memory() const overridecore::pack::interaction_graph::PDEdgevirtual
count_static_memory() const overridecore::pack::interaction_graph::PDEdgevirtual
declare_energies_final() overridecore::pack::hbonds::BareMinimumPDEdgeinlinevirtual
declare_energies_final_no_deletion()core::pack::interaction_graph::PDEdgeprotected
edge_weight() const core::pack::interaction_graph::EdgeBaseinline
edge_weight(Real)core::pack::interaction_graph::EdgeBaseprotected
EdgeBase(InteractionGraphBase *owner, int first_node_ind, int second_node_ind)core::pack::interaction_graph::EdgeBase
FixedBBEdge(InteractionGraphBase *owner, int first_node_ind, int second_node_ind)core::pack::interaction_graph::FixedBBEdgeinline
force_aa_neighbors(int node1aa, int node2aa) overridecore::pack::interaction_graph::PDEdgevirtual
force_all_aa_neighbors() overridecore::pack::interaction_graph::PDEdgevirtual
get_aa_submatrix_energies(int node1aa, int node2aa) const core::pack::interaction_graph::PDEdge
get_alternate_state_energy_first_node(int first_node_alt_state, int second_node_orig_state, SparseMatrixIndex const &second_node_orig_state_sparse_info, int first_node_state_offset_minus_1, int second_node_curr_num_states_per_aatype, int aa_neighbor_offset, ObjexxFCL::FArray1< core::PackerEnergy > &edge_energy_table)core::pack::interaction_graph::PDEdgeinlinestatic
get_alternate_state_energy_second_node(int first_node_orig_state, int second_node_alt_state, SparseMatrixIndex const &first_node_orig_state_sparse_info, SparseMatrixIndex const &second_node_alternate_state_sparse_info, int second_node_alt_state_num_states_per_aatype, int aa_neighbor_offset, ObjexxFCL::FArray1< core::PackerEnergy > &edge_energy_table)core::pack::interaction_graph::PDEdgeinlinestatic
get_current_two_body_energy()core::pack::interaction_graph::PDEdge
get_edge_table_ptr()core::pack::interaction_graph::PDEdge
get_edges_position_in_nodes_edge_vector(int index) const core::pack::interaction_graph::EdgeBaseinlineprotected
get_first_node_ind() const core::pack::interaction_graph::EdgeBase
get_node(int index) const core::pack::interaction_graph::EdgeBaseinlineprotected
get_node(int index)core::pack::interaction_graph::EdgeBaseinlineprotected
get_node_index(int index) const core::pack::interaction_graph::EdgeBaseinlineprotected
get_num_states_for_node(int index) const core::pack::interaction_graph::EdgeBaseinlineprotected
get_offsets_for_aatypes()core::pack::interaction_graph::PDEdge
get_other_ind(int callers_index) const core::pack::interaction_graph::EdgeBase
get_other_node(int callers_index) const core::pack::interaction_graph::EdgeBase
get_owner() const core::pack::interaction_graph::EdgeBaseinline
get_owner()core::pack::interaction_graph::EdgeBaseinline
get_second_node_ind() const core::pack::interaction_graph::EdgeBase
get_second_node_num_states_per_aa()core::pack::interaction_graph::PDEdge
get_sparse_aa_info(int node1aa, int node2aa) const overridecore::pack::interaction_graph::PDEdgevirtual
get_two_body_energy(int const, int const ) const overridecore::pack::hbonds::BareMinimumPDEdgeinlinevirtual
get_two_body_table_size() const core::pack::interaction_graph::PDEdge
mark_edge_for_deletion()core::pack::interaction_graph::EdgeBaseinlineprotected
marked_for_deletion() const core::pack::interaction_graph::EdgeBaseinline
pd_edge_table_all_zeros() const core::pack::interaction_graph::PDEdgeprotected
PDEdge(InteractionGraphBase *owner, int first_node_ind, int second_node_ind)core::pack::interaction_graph::PDEdge
PrecomputedPairEnergiesEdge(InteractionGraphBase *owner, int first_node_ind, int second_node_ind)core::pack::interaction_graph::PrecomputedPairEnergiesEdgeinline
prepare_for_simulated_annealing() overridecore::pack::hbonds::BareMinimumPDEdgeinlinevirtual
prepare_for_simulated_annealing_no_deletion()core::pack::interaction_graph::PDEdgeprotected
same_edge(int node1, int node2) const core::pack::interaction_graph::EdgeBase
set_edge_weight(Real weight) overridecore::pack::interaction_graph::PDEdgevirtual
set_pos_in_node_edgevector(int callers_index, int position)core::pack::interaction_graph::EdgeBase
set_pos_in_owners_list(std::list< EdgeBase * >::iterator edge_iterator)core::pack::interaction_graph::EdgeBase
set_sparse_aa_info(ObjexxFCL::FArray2_bool const &sparse_conn_info) overridecore::pack::interaction_graph::PDEdgevirtual
set_two_body_energy(int const rot1, int const rot2, PackerEnergy const twobody) overridecore::pack::hbonds::BareMinimumPDEdgeinlinevirtual
two_body_energies()core::pack::interaction_graph::PDEdgeinlineprotected
which_node(int node_index) const core::pack::interaction_graph::EdgeBaseinlineprotected
~BareMinimumPDEdge() overridecore::pack::hbonds::BareMinimumPDEdge
~EdgeBase()core::pack::interaction_graph::EdgeBasevirtual
~FixedBBEdge() overridecore::pack::interaction_graph::FixedBBEdgeinline
~PDEdge() overridecore::pack::interaction_graph::PDEdge
~PrecomputedPairEnergiesEdge() overridecore::pack::interaction_graph::PrecomputedPairEnergiesEdgeinline