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AddMembraneMover.hh File Reference

Initialize the RosettaMP framework by adding representations of the membrane environemnt to the conformation data held by the pose. More...

#include <protocols/membrane/AddMembraneMover.fwd.hh>
#include <protocols/moves/Mover.hh>
#include <core/conformation/membrane/SpanningTopology.fwd.hh>
#include <core/conformation/membrane/Span.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/types.hh>
#include <core/pose/ResidueIndexDescription.fwd.hh>
#include <utility/vector1.hh>
#include <numeric/xyzVector.hh>
#include <utility/sql_database/DatabaseSessionManager.hh>
#include <cstdlib>

Classes

struct  protocols::membrane::SpanInfo
 A utility class to store deferred parse span information. More...
 
class  protocols::membrane::AddMembraneMover
 Initialize the RosettaMP framework by adding representations of the membrane. More...
 

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::membrane
 

Detailed Description

Initialize the RosettaMP framework by adding representations of the membrane environemnt to the conformation data held by the pose.

Given a pose, configure RosettaMP by adding the following information:

  1. Create and append a membrane residue (MEM) to the pose
  2. Create and store a SpanningTopology object
  3. Setup the initial membrane coordinates (typically centered at the origin)
  4. (Optional) Initialize per-atom lipid accessibility data
  5. (Optional) Initialize dimensions of the aqueous pore

Initialize the ImplicitLipidMembraneInfo Upon completion, the call pose.conformation().is_membrane() will return true

Note
If you add a new step, please document and ensure all data is properly initialized by constructors, parse_my_tag, init_from_cmd, serialization routines, and xsd routines. This class is a data loading mammoth
Author
Rebecca Faye Alford (rfalf.nosp@m.ord1.nosp@m.2@gma.nosp@m.il.c.nosp@m.om)
JKLeman (julia.nosp@m..koe.nosp@m.hler..nosp@m.lema.nosp@m.n@gma.nosp@m.il.c.nosp@m.om)

Given a pose, configure RosettaMP by adding the following information:

  1. Create and append a membrane residue (MEM) to the pose
  2. Create and store a SpanningTopology object
  3. Setup the initial membrane coordinates (typically centered at the origin)
  4. (Optional) Initialize per-atom lipid accessibility data
  5. (Optional) Initialize dimensions of the aqueous pore Upon completion, the call pose.conformation().is_membrane() will return true
Note
If you add a new step, please document and ensure all data is properly initialized by constructors, parse_my_tag, init_from_cmd, serialization routines, and xsd routines. This class is a data loading mammoth
Docs last updated: 8/22/17
Author
Rebecca Faye Alford (rfalf.nosp@m.ord1.nosp@m.2@gma.nosp@m.il.c.nosp@m.om)
JKLeman (julia.nosp@m..koe.nosp@m.hler..nosp@m.lema.nosp@m.n@gma.nosp@m.il.c.nosp@m.om)