core::import_pose::pose_stream::LazySilentFilePoseInputStream Class Reference

#include <LazySilentFilePoseInputStream.hh>

Inheritance diagram for core::import_pose::pose_stream::LazySilentFilePoseInputStream:

Public Member Functions
	LazySilentFilePoseInputStream (utility::vector1< FileName > const &fns)
	LazySilentFilePoseInputStream ()
	~LazySilentFilePoseInputStream () override
utility::vector1< FileName > const &	filenames () const
bool	has_another_pose () override
void	fill_pose (core::pose::Pose &pose, core::chemical::ResidueTypeSet const &residue_set, bool const metapatches=true) override
void	fill_pose (core::pose::Pose &, bool const metapatches=true) override
std::string	get_last_pose_descriptor_string () const override
	Get a string describing the last pose and where it came from. More...
void	reset () override
Public Member Functions inherited from core::import_pose::pose_stream::PoseInputStream
	PoseInputStream ()
	~PoseInputStream () override
virtual utility::vector1< core::pose::PoseOP >	get_all_poses (core::chemical::ResidueTypeSet const &residue_set)
void	preprocess_pose (core::pose::Pose &pose)
	Perform common operations on a Pose dependent on command-line options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes. More...

Private Types
typedef std::string	string
typedef utility::file::FileName	FileName

Private Attributes
utility::vector1< FileName >	filenames_
utility::vector1< FileName >::const_iterator	current_filename_
core::io::silent::SilentFileData	sfd_
core::io::silent::SilentFileData::iterator	current_struct_

Member Typedef Documentation

FileName

typedef utility::file::FileName core::import_pose::pose_stream::LazySilentFilePoseInputStream::FileName

private

string

typedef std::string core::import_pose::pose_stream::LazySilentFilePoseInputStream::string

private

Constructor & Destructor Documentation

LazySilentFilePoseInputStream() [1/2]

core::import_pose::pose_stream::LazySilentFilePoseInputStream::LazySilentFilePoseInputStream

(

utility::vector1< FileName > const &

fns

)

References core::io::silent::SilentFileData::begin(), current_filename_, current_struct_, core::io::silent::SilentFileData::read_file(), and sfd_.

LazySilentFilePoseInputStream() [2/2]

core::import_pose::pose_stream::LazySilentFilePoseInputStream::LazySilentFilePoseInputStream

(

)

References reset().

~LazySilentFilePoseInputStream()

core::import_pose::pose_stream::LazySilentFilePoseInputStream::~LazySilentFilePoseInputStream ( )

inlineoverride

Member Function Documentation

filenames()

utility::vector1< FileName > const & core::import_pose::pose_stream::LazySilentFilePoseInputStream::filenames

(

)

const

References filenames_.

fill_pose() [1/2]

void core::import_pose::pose_stream::LazySilentFilePoseInputStream::fill_pose ( core::pose::Pose &  pose, bool const  metapatches = true  )

overridevirtual

Implements core::import_pose::pose_stream::PoseInputStream.

References core::io::silent::SilentFileData::begin(), core::io::silent::SilentFileData::clear(), current_filename_, current_struct_, core::pose::Pose::data(), core::pack::interaction_graph::debug, core::io::silent::SilentFileData::end(), filenames_, has_another_pose(), core::pose::datacache::CacheableDataType::JOBDIST_OUTPUT_TAG, core::import_pose::pose_stream::PoseInputStream::preprocess_pose(), core::io::silent::SilentFileData::read_file(), core::pose::setPoseExtraScore(), sfd_, and core::import_pose::pose_stream::tr().

fill_pose() [2/2]

void core::import_pose::pose_stream::LazySilentFilePoseInputStream::fill_pose ( core::pose::Pose &  pose, core::chemical::ResidueTypeSet const &  residue_set, bool const  metapatches = true  )

overridevirtual

Implements core::import_pose::pose_stream::PoseInputStream.

References core::io::silent::SilentFileData::begin(), core::io::silent::SilentFileData::clear(), current_filename_, current_struct_, core::pose::Pose::data(), core::pack::interaction_graph::debug, core::io::silent::SilentFileData::end(), filenames_, has_another_pose(), core::pose::datacache::CacheableDataType::JOBDIST_OUTPUT_TAG, core::import_pose::pose_stream::PoseInputStream::preprocess_pose(), core::io::silent::SilentFileData::read_file(), core::pose::setPoseExtraScore(), sfd_, and core::import_pose::pose_stream::tr().

get_last_pose_descriptor_string()

std::string core::import_pose::pose_stream::LazySilentFilePoseInputStream::get_last_pose_descriptor_string ( ) const

overridevirtual

Get a string describing the last pose and where it came from.

Input tag + filename.

Author

Vikram K. Mulligan (vmull.nosp@m.igan.nosp@m.@flat.nosp@m.iron.nosp@m.insti.nosp@m.tute.nosp@m..org).

Implements core::import_pose::pose_stream::PoseInputStream.

References current_struct_, core::io::silent::SilentFileData::filename(), and sfd_.

has_another_pose()

bool core::import_pose::pose_stream::LazySilentFilePoseInputStream::has_another_pose ( )

overridevirtual

Implements core::import_pose::pose_stream::PoseInputStream.

References current_filename_, current_struct_, core::io::silent::SilentFileData::end(), filenames_, and sfd_.

Referenced by fill_pose().

reset()

void core::import_pose::pose_stream::LazySilentFilePoseInputStream::reset ( )

overridevirtual

Implements core::import_pose::pose_stream::PoseInputStream.

References current_filename_, current_struct_, core::io::silent::SilentFileData::end(), filenames_, and sfd_.

Referenced by LazySilentFilePoseInputStream().

Member Data Documentation

current_filename_

utility::vector1< FileName >::const_iterator core::import_pose::pose_stream::LazySilentFilePoseInputStream::current_filename_

private

Referenced by fill_pose(), has_another_pose(), LazySilentFilePoseInputStream(), and reset().

current_struct_

core::io::silent::SilentFileData::iterator core::import_pose::pose_stream::LazySilentFilePoseInputStream::current_struct_

private

Referenced by fill_pose(), get_last_pose_descriptor_string(), has_another_pose(), LazySilentFilePoseInputStream(), and reset().

filenames_

utility::vector1< FileName > core::import_pose::pose_stream::LazySilentFilePoseInputStream::filenames_

private

Referenced by filenames(), fill_pose(), has_another_pose(), and reset().

sfd_

core::io::silent::SilentFileData core::import_pose::pose_stream::LazySilentFilePoseInputStream::sfd_

private

Referenced by fill_pose(), get_last_pose_descriptor_string(), has_another_pose(), LazySilentFilePoseInputStream(), and reset().

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The documentation for this class was generated from the following files:

• src/core/import_pose/pose_stream/LazySilentFilePoseInputStream.hh
• src/core/import_pose/pose_stream/LazySilentFilePoseInputStream.cc