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loophash_util.cc File Reference
#include <protocols/sic_dock/util.hh>
#include <protocols/sic_dock/loophash_util.hh>
#include <protocols/sic_dock/RigidScore.hh>
#include <protocols/sic_dock/SICFast.hh>
#include <core/pose/util.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/HomogeneousTransform.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/ResidueFactory.hh>
#include <basic/Tracer.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::sic_dock
 

Typedefs

using protocols::sic_dock::Real = core::Real
 
using protocols::sic_dock::Pose = core::pose::Pose
 
using protocols::sic_dock::Xform = Xform
 
using protocols::sic_dock::Vecs = utility::vector1< Vec >
 
using protocols::sic_dock::Reals = utility::vector1< Real >
 
using protocols::sic_dock::Sizes = utility::vector1< core::Size >
 
using protocols::sic_dock::Xforms = numeric::Xforms
 
using protocols::sic_dock::Scores = utility::vector1< RigidScoreCOP >
 

Functions

static basic::Tracer TR ("protocols.sic_dock.loophash_util")
 
Vec3 protocols::sic_dock::get_leap_lower_stub (core::pose::Pose const &pose, core::Size ir)
 
Vec3 protocols::sic_dock::get_leap_upper_stub (core::pose::Pose const &pose, core::Size ir)
 
Xform protocols::sic_dock::vec3_to_stub (Vec3 const &v3)
 
Xform protocols::sic_dock::vec3_to_stub (Xform const &xform, Vec3 const &v3)
 
void protocols::sic_dock::get_termini_from_pose (core::pose::Pose const &pose, core::Size ir, TermInfo &lowers, TermInfo &uppers)
 
void protocols::sic_dock::get_termini_from_pose (core::pose::Pose const &pose, TermInfo &lowers, TermInfo &uppers)
 
numeric::geometry::hashing::Real6 protocols::sic_dock::get_leap_6dof (Xform const &lower, Xform const &upper)
 
core::Size protocols::sic_dock::count_linkers (Xform const &lower, Xform const &upper, protocols::loophash::LoopHashLibraryCOP loop_hash_library, Sizes const &loopsizes, core::Size radius)
 
core::Size protocols::sic_dock::dump_loophash_linkers (Xform const &lower, Xform const &upper, protocols::loophash::LoopHashLibraryCOP loop_hash_library, Sizes const &loopsizes, core::Size radius, std::string const &outtag)
 
Real protocols::sic_dock::linker_count2score (core::Size count)
 

Function Documentation

static basic::Tracer TR ( "protocols.sic_dock.loophash_util"  )
static