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protocols::stepwise::modeler::working_parameters Namespace Reference

Classes

class  StepWiseBasicWorkingParameters
 
class  StepWiseWorkingParameters
 

Typedefs

typedef
utility::pointer::shared_ptr
< StepWiseBasicWorkingParameters
StepWiseBasicWorkingParametersOP
 
typedef
utility::pointer::shared_ptr
< StepWiseBasicWorkingParameters
const > 
StepWiseBasicWorkingParametersCOP
 
typedef
utility::pointer::shared_ptr
< StepWiseWorkingParameters
StepWiseWorkingParametersOP
 
typedef
utility::pointer::shared_ptr
< StepWiseWorkingParameters
const > 
StepWiseWorkingParametersCOP
 

Functions

StepWiseWorkingParametersOP setup_working_parameters_for_swa (utility::vector1< core::Size > const &moving_res_list, pose::Pose const &pose, pose::PoseCOP native_pose, utility::vector1< core::Size > const &user_defined_bridge_res, utility::vector1< core::Size > const &working_minimize_res)
 
StepWiseWorkingParametersOP setup_working_parameters_explicit (core::Size const rebuild_res, pose::Pose const &pose, pose::PoseCOP native_pose)
 
bool figure_out_rebuild_bulge_mode (pose::Pose const &pose, core::Size const rebuild_res)
 
bool figure_out_sample_both_sugar_base_rotamer (pose::Pose const &pose, bool const floating_base, core::Size const rebuild_suite)
 

Typedef Documentation

Function Documentation

bool protocols::stepwise::modeler::working_parameters::figure_out_rebuild_bulge_mode ( pose::Pose const &  pose,
core::Size const  rebuild_res 
)
bool protocols::stepwise::modeler::working_parameters::figure_out_sample_both_sugar_base_rotamer ( pose::Pose const &  pose,
bool const  floating_base,
core::Size const  rebuild_suite 
)
StepWiseWorkingParametersOP protocols::stepwise::modeler::working_parameters::setup_working_parameters_explicit ( core::Size const  rebuild_res,
pose::Pose const &  pose,
pose::PoseCOP  native_pose 
)
StepWiseWorkingParametersOP protocols::stepwise::modeler::working_parameters::setup_working_parameters_for_swa ( utility::vector1< core::Size > const &  moving_res_list,
pose::Pose const &  pose,
pose::PoseCOP  native_pose,
utility::vector1< core::Size > const &  user_defined_bridge_res,
utility::vector1< core::Size > const &  working_minimize_res 
)