protocols::simple_filters::JumpEvaluator Class Reference

#include <JumpEvaluator.hh>

Inheritance diagram for protocols::simple_filters::JumpEvaluator:

Public Member Functions
	JumpEvaluator (core::pose::Pose const &native_pose, core::Size jump_nr)
core::Real	apply (core::pose::Pose &pose) const override
	evaluate pose More...
Public Member Functions inherited from protocols::evaluation::SingleValuePoseEvaluator< core::Real >
	SingleValuePoseEvaluator (std::string const &name="UNSPECIFIED_SingleValuePoseEvaluator")
void	apply (core::pose::Pose &, std::string tag, core::io::silent::SilentStruct &pss) const override
	evaluate pose and store values in Silent_Struct why is this specific to a specific type of SilentStruct? that seems needlessly pointless and overly constraining. More...
virtual void	apply (core::pose::Pose &, std::string tag, core::io::silent::SilentStruct &pss) const =0
	evaluate pose and store values in Silent_Struct More...
virtual void	apply (core::io::silent::SilentStruct &pss) const
	direct application to SilentStruct... default implementation makes pose and calls "apply", you can overload if you don't need the pose-step More...
bool	applicable (core::pose::Pose const &) const override
core::Size	size () const override
std::string	name (core::Size) const override
Public Member Functions inherited from protocols::evaluation::PoseEvaluator
	PoseEvaluator ()
	~PoseEvaluator () override=default
virtual void	apply (core::io::silent::SilentStruct &pss) const
	direct application to SilentStruct... default implementation makes pose and calls "apply", you can overload if you don't need the pose-step More...

Private Attributes
core::id::AtomID	up_jump_atom_
core::id::AtomID	down_jump_atom_
core::id::StubID	down_stub_
core::id::StubID	up_stub_
core::kinematics::Stub	native_up_
core::kinematics::Stub	native_down_

Constructor & Destructor Documentation

JumpEvaluator()

protocols::simple_filters::JumpEvaluator::JumpEvaluator	(	core::pose::Pose const &	native_pose,
		core::Size	jump_nr
	)

References core::kinematics::AtomTree::atom(), core::chemical::ResidueType::atom_index(), core::conformation::Conformation::atom_tree(), core::pose::Pose::conformation(), down_jump_atom_, down_stub_, core::pose::Pose::fold_tree(), core::kinematics::tree::Atom::get_stub(), core::kinematics::Edge::has_atom_info(), core::chemical::ResidueTypeBase::is_protein(), core::kinematics::FoldTree::jump_edge(), native_down_, native_up_, core::pose::Pose::residue_type(), core::kinematics::Edge::start(), core::kinematics::Edge::start_atom(), core::kinematics::Edge::stop(), core::kinematics::Edge::stop_atom(), core::kinematics::AtomTree::stub_from_id(), up_jump_atom_, and up_stub_.

Member Function Documentation

apply()

core::Real protocols::simple_filters::JumpEvaluator::apply ( core::pose::Pose &  ) const

overridevirtual

evaluate pose

Implements protocols::evaluation::SingleValuePoseEvaluator< core::Real >.

References core::kinematics::AtomTree::atom(), core::conformation::Conformation::atom_tree(), core::kinematics::Stub::build_fake_xyz(), core::pose::Pose::conformation(), down_jump_atom_, down_stub_, core::kinematics::tree::Atom::get_stub(), core::kinematics::RT::make_jump(), native_down_, native_up_, core::scoring::rms, core::kinematics::AtomTree::stub_from_id(), up_jump_atom_, up_stub_, and core::id::AtomID::valid().

Member Data Documentation

down_jump_atom_

core::id::AtomID protocols::simple_filters::JumpEvaluator::down_jump_atom_

private

Referenced by apply(), and JumpEvaluator().

down_stub_

core::id::StubID protocols::simple_filters::JumpEvaluator::down_stub_

private

Referenced by apply(), and JumpEvaluator().

native_down_

core::kinematics::Stub protocols::simple_filters::JumpEvaluator::native_down_

private

Referenced by apply(), and JumpEvaluator().

native_up_

core::kinematics::Stub protocols::simple_filters::JumpEvaluator::native_up_

private

Referenced by apply(), and JumpEvaluator().

up_jump_atom_

core::id::AtomID protocols::simple_filters::JumpEvaluator::up_jump_atom_

private

Referenced by apply(), and JumpEvaluator().

up_stub_

core::id::StubID protocols::simple_filters::JumpEvaluator::up_stub_

private

Referenced by apply(), and JumpEvaluator().

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The documentation for this class was generated from the following files:

• src/protocols/simple_filters/JumpEvaluator.hh
• src/protocols/simple_filters/JumpEvaluator.cc