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core::pack::interaction_graph::LinearMemEdge Member List

This is the complete list of members for core::pack::interaction_graph::LinearMemEdge, including all inherited members.

acknowledge_partial_state_change(int node_ind, int new_state, SparseMatrixIndex const &new_state_sparse_info, int bumped_recent_history_index, int new_state_recent_history_index)core::pack::interaction_graph::LinearMemEdge
acknowledge_state_change(int node_ind, int new_state, SparseMatrixIndex const &new_state_sparse_info, int bumped_recent_history_index, int new_state_recent_history_index, core::PackerEnergy &new_energy)core::pack::interaction_graph::LinearMemEdge
acknowledge_state_zeroed(int node_ind)core::pack::interaction_graph::LinearMemEdge
acknowledge_substitution(int substituted_node_index, core::PackerEnergy const curr_state_energy, int nodes_new_state, SparseMatrixIndex const &nodes_new_state_sparse_info, int bumped_recent_history_index, int new_state_recent_history_index, int neighbors_curr_state)core::pack::interaction_graph::LinearMemEdgeinline
alt_state_energy_core::pack::interaction_graph::LinearMemEdgeprivate
count_dynamic_memory() const overridecore::pack::interaction_graph::LinearMemEdgevirtual
count_static_memory() const overridecore::pack::interaction_graph::LinearMemEdgevirtual
curr_state_energy_core::pack::interaction_graph::LinearMemEdgeprivate
declare_energies_final() overridecore::pack::interaction_graph::LinearMemEdgevirtual
declare_energies_final_no_deletion()core::pack::interaction_graph::LinearMemEdgeinlineprotected
edge_weight() const core::pack::interaction_graph::EdgeBaseinline
edge_weight(Real)core::pack::interaction_graph::EdgeBaseprotected
EdgeBase(InteractionGraphBase *owner, int first_node_ind, int second_node_ind)core::pack::interaction_graph::EdgeBase
eval_type(int node_index) const core::pack::interaction_graph::OnTheFlyEdgeinline
FixedBBEdge(InteractionGraphBase *owner, int first_node_ind, int second_node_ind)core::pack::interaction_graph::FixedBBEdgeinline
force_aa_neighbors(int node1aa, int node2aa) overridecore::pack::interaction_graph::LinearMemEdgevirtual
force_all_aa_neighbors() overridecore::pack::interaction_graph::LinearMemEdgevirtual
get_current_two_body_energy() const core::pack::interaction_graph::LinearMemEdge
get_edges_position_in_nodes_edge_vector(int index) const core::pack::interaction_graph::EdgeBaseinlineprotected
get_energy_following_partial_state_assignment()core::pack::interaction_graph::LinearMemEdge
get_energy_for_alt_state(bool store_rpes, int changing_node_index, int alternate_state, int alternate_state_recent_history_index, int other_node_curr_state, int other_node_state_recent_history_index)core::pack::interaction_graph::LinearMemEdge
get_first_node_ind() const core::pack::interaction_graph::EdgeBase
get_glycine_correction(int which_node, int state) const core::pack::interaction_graph::OnTheFlyEdgeinlineprotected
get_glycine_correction_for_node(int node_ind, int state) const core::pack::interaction_graph::OnTheFlyEdgeinline
get_linmem_ig_owner() const core::pack::interaction_graph::LinearMemEdgeinlineprivate
get_linmem_ig_owner()core::pack::interaction_graph::LinearMemEdgeinlineprivate
get_linmem_node(int index) const core::pack::interaction_graph::LinearMemEdgeinlineprivate
get_linmem_node(int index)core::pack::interaction_graph::LinearMemEdgeinlineprivate
get_node(int index) const core::pack::interaction_graph::EdgeBaseinlineprotected
get_node(int index)core::pack::interaction_graph::EdgeBaseinlineprotected
get_node_index(int index) const core::pack::interaction_graph::EdgeBaseinlineprotected
get_num_states_for_node(int index) const core::pack::interaction_graph::EdgeBaseinlineprotected
get_otf_node(int which_node) const core::pack::interaction_graph::OnTheFlyEdgeinlineprotected
get_otf_node(int which_node)core::pack::interaction_graph::OnTheFlyEdgeinlineprotected
get_other_ind(int callers_index) const core::pack::interaction_graph::EdgeBase
get_other_node(int callers_index) const core::pack::interaction_graph::EdgeBase
get_owner() const core::pack::interaction_graph::EdgeBaseinline
get_owner()core::pack::interaction_graph::EdgeBaseinline
get_proline_correction(int which_node, int state) const core::pack::interaction_graph::OnTheFlyEdgeinlineprotected
get_proline_correction_for_node(int node_ind, int state) const core::pack::interaction_graph::OnTheFlyEdgeinline
get_second_node_ind() const core::pack::interaction_graph::EdgeBase
get_sparse_aa_info(int node1aa, int node2aa) const overridecore::pack::interaction_graph::LinearMemEdgevirtual
get_sparse_aa_neighbor_info()core::pack::interaction_graph::LinearMemEdge
get_two_body_energy(int const node1state, int const node2state) const overridecore::pack::interaction_graph::LinearMemEdgevirtual
get_two_body_table_size() const core::pack::interaction_graph::LinearMemEdge
handle_bumped_recent_history_state_for_node(int node_substituted, int node_not_substituted, int bumped_recent_history_index)core::pack::interaction_graph::LinearMemEdgeprivate
LinearMemEdge(InteractionGraphBase *owner, int first_node_ind, int second_node_ind)core::pack::interaction_graph::LinearMemEdge
LinearMemEdge()core::pack::interaction_graph::LinearMemEdgeprivate
LinearMemEdge(LinearMemEdge const &)core::pack::interaction_graph::LinearMemEdgeprivate
long_range_interactions_exist() const core::pack::interaction_graph::OnTheFlyEdgeinline
mark_edge_for_deletion()core::pack::interaction_graph::EdgeBaseinlineprotected
marked_for_deletion() const core::pack::interaction_graph::EdgeBaseinline
NOT_YET_COMPUTED_ENERGYcore::pack::interaction_graph::LinearMemEdgestatic
note_long_range_interactions_exist()core::pack::interaction_graph::OnTheFlyEdgeinline
note_short_range_interactions_exist()core::pack::interaction_graph::OnTheFlyEdgeinline
OnTheFlyEdge(InteractionGraphBase *owner, int first_node_ind, int second_node_ind)core::pack::interaction_graph::OnTheFlyEdge
operator=(LinearMemEdge const &)core::pack::interaction_graph::LinearMemEdgeprivate
partial_state_assignment_core::pack::interaction_graph::LinearMemEdgeprivate
pd_edge_table_all_zeros() const core::pack::interaction_graph::LinearMemEdgeinlineprotected
prepare_for_simulated_annealing() overridecore::pack::interaction_graph::LinearMemEdgevirtual
prepare_for_simulated_annealing_no_deletion()core::pack::interaction_graph::LinearMemEdgeinlineprotected
preped_for_sim_annealing_core::pack::interaction_graph::LinearMemEdgeprivate
print_current_energy() const core::pack::interaction_graph::LinearMemEdge
reset_state_energies(int node_index, int state, int recent_history_id)core::pack::interaction_graph::LinearMemEdge
same_edge(int node1, int node2) const core::pack::interaction_graph::EdgeBase
set_edge_weight(Real weight) overridecore::pack::interaction_graph::LinearMemEdgevirtual
set_GlyCorrection_values(int node_not_necessarily_glycine, int state, core::PackerEnergy bb_regbb_E, core::PackerEnergy bb_glybb_E, core::PackerEnergy sc_regbb_E, core::PackerEnergy sc_glybb_E)core::pack::interaction_graph::OnTheFlyEdge
set_pos_in_node_edgevector(int callers_index, int position)core::pack::interaction_graph::EdgeBase
set_pos_in_owners_list(std::list< EdgeBase * >::iterator edge_iterator)core::pack::interaction_graph::EdgeBase
set_ProCorrection_values(int node_not_necessarily_proline, int state, core::PackerEnergy bb_regbb_E, core::PackerEnergy bb_probb_E, core::PackerEnergy sc_regbb_E, core::PackerEnergy sc_probb_E)core::pack::interaction_graph::OnTheFlyEdge
set_sparse_aa_info(ObjexxFCL::FArray2_bool const &) overridecore::pack::interaction_graph::LinearMemEdgevirtual
short_range_interactions_exist() const core::pack::interaction_graph::OnTheFlyEdgeinline
sparse_aa_neighbors_core::pack::interaction_graph::LinearMemEdgeprivate
store_curr_state_energy()core::pack::interaction_graph::LinearMemEdgeprivate
store_rpes_core::pack::interaction_graph::LinearMemEdgeprivate
stored_rpes_core::pack::interaction_graph::LinearMemEdgeprivate
which_node(int node_index) const core::pack::interaction_graph::EdgeBaseinlineprotected
wipe(int node)core::pack::interaction_graph::LinearMemEdgeprivate
~EdgeBase()core::pack::interaction_graph::EdgeBasevirtual
~FixedBBEdge() overridecore::pack::interaction_graph::FixedBBEdgeinline
~LinearMemEdge() overridecore::pack::interaction_graph::LinearMemEdge
~OnTheFlyEdge() overridecore::pack::interaction_graph::OnTheFlyEdge