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protocols::fold_from_loops::movers::NubInitioLoopClosureMover Class Reference

Adds constraints generated by ConstraintGenerators to a pose. More...

#include <NubInitioLoopClosureMover.hh>

Inheritance diagram for protocols::fold_from_loops::movers::NubInitioLoopClosureMover:
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Public Member Functions

 NubInitioLoopClosureMover ()
 
 ~NubInitioLoopClosureMover () override
 
void apply (core::pose::Pose &pose) override
 Main Method. More...
 
core::scoring::ScoreFunctionOP centroid_scorefxn () const
 centroid_score is provided to the CCDclosure to close the loop. More...
 
void centroid_scorefxn (core::scoring::ScoreFunctionOP const &scorefxn)
 
core::scoring::ScoreFunctionOP fullatom_scorefxn () const
 fullatom_score is used to pack sidechains after the closure More...
 
void fullatom_scorefxn (core::scoring::ScoreFunctionOP const &scorefxn)
 
core::Size break_side () const
 break_side defines how many residues in each side of the chainbreak are allowed to move (as long as they are not !FLEXIBLE+MOTIF labeled residues) More...
 
void break_side (core::Real value)
 
bool break_side_ramp () const
 when set to true, in each unsuccesfull closure try, it allows one more residue to move More...
 
void break_side_ramp (bool pick)
 
void max_trials (core::Size choice)
 set how many times we try to close the loops before accepting we cannot More...
 
core::Size max_trials () const
 
std::string fragments_id () const
 id of the fragments loaded into the DataMap More...
 
void fragments_id (std::string const &name)
 
core::fragment::FragSetOP fragments () const
 fragments More...
 
void fragments (core::fragment::FragSetOP frags)
 
bool trust () const
 if true, trust the residue variants to locate chain breaks; otherwise use the FoldTree More...
 
void trust (bool pick)
 
bool label () const
 if true, label the resiudes that have moved or been repacked during the Mover. More...
 
void label (bool pick)
 
bool centroid () const
 if true, assume input is centroid, and so should be the output. More...
 
void centroid (bool pick)
 
bool design () const
 if true, a part from repacking, also redesign the residues of the loop and around following FFL rules. More...
 
void design (bool pick)
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data) override
 parse XML tag (to use this Mover in Rosetta Scripts) More...
 
protocols::moves::MoverOP fresh_instance () const override
 required in the context of the parser/scripting scheme More...
 
protocols::moves::MoverOP clone () const override
 required in the context of the parser/scripting scheme More...
 
std::string get_name () const override
 Each derived class must specify its name. The class name. More...
 
- Public Member Functions inherited from protocols::moves::Mover
 Mover ()
 
virtual MoverOP create ()
 
MoverCOP get_self_ptr () const
 
MoverOP get_self_ptr ()
 
MoverCAP get_self_weak_ptr () const
 
MoverAP get_self_weak_ptr ()
 
 Mover (std::string const &type_name)
 sets the type for a mover; name_ has been removed (2010/05/14) More...
 
virtual void test_move (Pose &pose)
 : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...
 
virtual bool reinitialize_for_each_job () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More...
 
virtual bool reinitialize_for_new_input () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More...
 
MoverStatus get_last_move_status () const
 end parser interface, start Job Distributor interface///////////// More...
 
void reset_status ()
 resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...
 
virtual core::pose::PoseOP get_additional_output ()
 Mechanism by which a mover may return multiple output poses from a single input pose. More...
 
void set_type (std::string const &setting)
 Set the 'type' string. More...
 
std::string get_type () const
 
void type (const std::string &type_in)
 Set the 'type' string. More...
 
std::string const & type () const
 Get the set 'type' string. More...
 
virtual void set_input_pose (PoseCOP pose)
 setter for poses contained for rms More...
 
virtual void set_native_pose (PoseCOP pose)
 setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...
 
PoseCOP get_input_pose () const
 
PoseCOP get_native_pose () const
 
void set_current_job (protocols::jobdist::BasicJobCOP job)
 
jobdist::BasicJobCOP get_current_job () const
 
virtual void set_current_tag (std::string const &new_tag)
 
std::string get_current_tag () const
 A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...
 
virtual void show (std::ostream &output=std::cout) const
 Outputs details about the Mover, including current settings. More...
 
virtual core::Real last_proposal_density_ratio ()
 
virtual void clear_info ()
 Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...
 
virtual Stringsinfo ()
 non-const accessor More...
 
virtual Strings const & info () const
 const accessor More...
 
virtual bool mover_provides_citation_info () const
 Does this mover provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool mover_is_unpublished () const
 Does this mover indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static std::string mover_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 
- Static Public Member Functions inherited from protocols::moves::Mover
static std::string name ()
 
static void register_options ()
 Overload this static method if you access options within the mover. More...
 

Private Member Functions

void repack (core::pose::Pose &pose)
 Repack sidechains without alter bb. More...
 
bool is_cutpoint_close (core::pose::Pose const &pose, core::Size const &residue, bool by_variant=false) const
 Evaluate if the supossed cutpoint has already been fixed. It is assumed that one previously check if the residue is cutpoint. More...
 
core::kinematics::FoldTree make_final_tree (core::pose::Pose const &pose) const
 Generates the expected final FoldTree that the Pose should have. More...
 
core::kinematics::MoveMapOP loop_closure_movemap (core::pose::Pose const &pose)
 Generates the movemap for loop_closure. More...
 
core::select::residue_selector::ResidueSelectorOP movable_residues () const
 Selector to pick residues labeled TEMPLATE or FLEXIBLE; the only ones that can be allowed to move. More...
 
bool has_movable_residues (core::pose::Pose const &pose) const
 This mover works only when there are residues labeled TEMPLATE of FLEXIBLE. If there are no residues labeled like so, CCD closure will be unable to close and will end up reporting a failure. More...
 
core::select::residue_selector::ResidueSelectorOP packable_residues () const
 Selector to pick residues labeled TEMPLATE, FLEXIBLE or COLDSPOT. More...
 
core::select::residue_selector::ResidueSelectorOP active_movable_residues (core::pose::Pose const &pose)
 Selector to pick residues labeled TEMPLATE or FLEXIBLE; that are in the appropiate sequence distance of the cutpoints. More...
 
core::select::residue_selector::ResidueSelectorOP active_packable_residues () const
 Selector to pick residues labeled TEMPLATE, FLEXIBLE or COLDSPOT; that are part of the moved loop. More...
 
bool has_cutpoints (core::pose::Pose const &pose) const
 Check if there are cutpoints in the Pose. More...
 
void apply_closure_trust (core::pose::Pose &pose, bool by_variant=false) const
 Checks if the residues still considered cutpoints have bee actually closed or not. More...
 
void show_cutpoints (core::pose::Pose const &pose) const
 Show process. More...
 
void make_cutpoints_coherent_to_foldtree (core::pose::Pose &pose) const
 Re-check the residue variant according to the FoldTree. More...
 
void make_foldtree_coherent_to_cutpoints (core::pose::Pose &pose) const
 Re-check FoldTree according to residue variant. More...
 

Static Private Member Functions

static
core::scoring::ScoreFunctionOP 
default_centroid_scorefxn ()
 
static core::Real default_centroid_chainclosure_weight ()
 
static
core::scoring::ScoreFunctionOP 
set_centroid_default_chainclosure_weight (core::scoring::ScoreFunctionOP const &scorefxn)
 
static
core::scoring::ScoreFunctionOP 
default_fullatom_scorefxn ()
 
static core::Size default_break_side ()
 
static bool default_break_side_ramp ()
 
static core::Size default_max_trials ()
 
static bool default_trust ()
 
static bool default_label ()
 
static bool default_centroid ()
 
static bool default_design ()
 

Private Attributes

core::scoring::ScoreFunctionOP centroid_scorefxn_
 
core::scoring::ScoreFunctionOP fullatom_scorefxn_
 
core::Size break_side_
 
core::Size break_side_ramp_value_
 
bool break_side_ramp_
 
core::Real max_trials_
 
std::string fragments_id_
 
core::fragment::FragSetOP fragments_
 
core::select::residue_selector::ReturnResidueSubsetSelector altered_residues_
 
bool trust_
 
bool label_
 
bool centroid_
 
bool design_
 

Additional Inherited Members

- Public Types inherited from protocols::moves::Mover
typedef utility::tag::TagCOP TagCOP
 
typedef core::pose::Pose Pose
 
typedef core::pose::PoseCOP PoseCOP
 
typedef std::list< std::string > Strings
 
- Protected Member Functions inherited from protocols::moves::Mover
void set_last_move_status (MoverStatus status)
 nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...
 

Detailed Description

Adds constraints generated by ConstraintGenerators to a pose.

Constructor & Destructor Documentation

protocols::fold_from_loops::movers::NubInitioLoopClosureMover::NubInitioLoopClosureMover ( )
protocols::fold_from_loops::movers::NubInitioLoopClosureMover::~NubInitioLoopClosureMover ( )
overridedefault

Member Function Documentation

core::select::residue_selector::ResidueSelectorOP protocols::fold_from_loops::movers::NubInitioLoopClosureMover::active_movable_residues ( core::pose::Pose const &  pose)
private

Selector to pick residues labeled TEMPLATE or FLEXIBLE; that are in the appropiate sequence distance of the cutpoints.

References altered_residues_, break_side_, break_side_ramp_value_, movable_residues(), and core::select::residue_selector::ReturnResidueSubsetSelector::set_residue_subset().

Referenced by apply(), and loop_closure_movemap().

core::select::residue_selector::ResidueSelectorOP protocols::fold_from_loops::movers::NubInitioLoopClosureMover::active_packable_residues ( ) const
private

Selector to pick residues labeled TEMPLATE, FLEXIBLE or COLDSPOT; that are part of the moved loop.

References altered_residues_, core::select::residue_selector::ReturnResidueSubsetSelector::clone(), and packable_residues().

Referenced by repack().

void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::apply ( core::pose::Pose )
overridevirtual

Main Method.

Implements protocols::moves::Mover.

References active_movable_residues(), protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover::apply(), protocols::fold_from_loops::movers::DisplayPoseLabelsMover::apply(), break_side_, break_side_ramp_, break_side_ramp_value_, core::chemical::CENTROID, centroid_, centroid_scorefxn_, protocols::jumping::close_chainbreaks(), core::pose::Pose::conformation(), core::pose::Pose::constraint_set(), core::chemical::CUTPOINT_LOWER, core::chemical::CUTPOINT_UPPER, core::chemical::FA_STANDARD, protocols::moves::FAIL_BAD_INPUT, protocols::moves::FAIL_DO_NOT_RETRY, core::pose::Pose::fold_tree(), fragments_, get_name(), has_cutpoints(), has_movable_residues(), core::conformation::Residue::has_variant_type(), label_, loop_closure_movemap(), make_cutpoints_coherent_to_foldtree(), make_final_tree(), make_foldtree_coherent_to_cutpoints(), max_trials_, protocols::moves::MS_SUCCESS, core::pose::Pose::remove_constraints(), core::pose::remove_variant_type_from_pose_residue(), repack(), core::pose::Pose::replace_residue(), core::conformation::Conformation::residue(), set_centroid_default_chainclosure_weight(), protocols::moves::Mover::set_last_move_status(), core::pose::setPoseExtraScore(), show_cutpoints(), protocols::fold_from_loops::movers::TR(), trust_, core::pose::Pose::update_residue_neighbors(), and protocols::fold_from_loops::movers::DisplayPoseLabelsMover::write().

Referenced by protocols::fold_from_loops::NubInitioMover::post_process().

void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::apply_closure_trust ( core::pose::Pose pose,
bool  by_variant = false 
) const
private
core::Size protocols::fold_from_loops::movers::NubInitioLoopClosureMover::break_side ( ) const

break_side defines how many residues in each side of the chainbreak are allowed to move (as long as they are not !FLEXIBLE+MOTIF labeled residues)

References break_side_.

Referenced by parse_my_tag().

void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::break_side ( core::Real  value)

References break_side_.

bool protocols::fold_from_loops::movers::NubInitioLoopClosureMover::break_side_ramp ( ) const

when set to true, in each unsuccesfull closure try, it allows one more residue to move

References break_side_ramp_.

Referenced by parse_my_tag(), and protocols::fold_from_loops::NubInitioMover::post_process().

void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::break_side_ramp ( bool  pick)

References break_side_ramp_.

bool protocols::fold_from_loops::movers::NubInitioLoopClosureMover::centroid ( ) const

if true, assume input is centroid, and so should be the output.

References centroid_.

Referenced by protocols::fold_from_loops::NubInitioMover::post_process().

void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::centroid ( bool  pick)

References centroid_.

core::scoring::ScoreFunctionOP protocols::fold_from_loops::movers::NubInitioLoopClosureMover::centroid_scorefxn ( ) const

centroid_score is provided to the CCDclosure to close the loop.

References centroid_scorefxn_.

Referenced by parse_my_tag().

void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::centroid_scorefxn ( core::scoring::ScoreFunctionOP const &  scorefxn)

References centroid_scorefxn_.

protocols::moves::MoverOP protocols::fold_from_loops::movers::NubInitioLoopClosureMover::clone ( ) const
overridevirtual

required in the context of the parser/scripting scheme

Reimplemented from protocols::moves::Mover.

core::Size protocols::fold_from_loops::movers::NubInitioLoopClosureMover::default_break_side ( )
staticprivate

Referenced by parse_my_tag(), and provide_xml_schema().

bool protocols::fold_from_loops::movers::NubInitioLoopClosureMover::default_break_side_ramp ( )
staticprivate

Referenced by parse_my_tag(), and provide_xml_schema().

bool protocols::fold_from_loops::movers::NubInitioLoopClosureMover::default_centroid ( )
staticprivate
core::Real protocols::fold_from_loops::movers::NubInitioLoopClosureMover::default_centroid_chainclosure_weight ( )
staticprivate
core::scoring::ScoreFunctionOP protocols::fold_from_loops::movers::NubInitioLoopClosureMover::default_centroid_scorefxn ( )
staticprivate
bool protocols::fold_from_loops::movers::NubInitioLoopClosureMover::default_design ( )
staticprivate

Referenced by parse_my_tag(), and provide_xml_schema().

core::scoring::ScoreFunctionOP protocols::fold_from_loops::movers::NubInitioLoopClosureMover::default_fullatom_scorefxn ( )
staticprivate
bool protocols::fold_from_loops::movers::NubInitioLoopClosureMover::default_label ( )
staticprivate

Referenced by parse_my_tag(), and provide_xml_schema().

core::Size protocols::fold_from_loops::movers::NubInitioLoopClosureMover::default_max_trials ( )
staticprivate

Referenced by parse_my_tag(), and provide_xml_schema().

bool protocols::fold_from_loops::movers::NubInitioLoopClosureMover::default_trust ( )
staticprivate

Referenced by parse_my_tag(), and provide_xml_schema().

bool protocols::fold_from_loops::movers::NubInitioLoopClosureMover::design ( ) const

if true, a part from repacking, also redesign the residues of the loop and around following FFL rules.

References design_.

Referenced by parse_my_tag().

void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::design ( bool  pick)

References design_.

core::fragment::FragSetOP protocols::fold_from_loops::movers::NubInitioLoopClosureMover::fragments ( ) const
void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::fragments ( core::fragment::FragSetOP  frags)

References fragments_.

std::string protocols::fold_from_loops::movers::NubInitioLoopClosureMover::fragments_id ( ) const

id of the fragments loaded into the DataMap

References fragments_id_.

Referenced by parse_my_tag().

void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::fragments_id ( std::string const &  name)
protocols::moves::MoverOP protocols::fold_from_loops::movers::NubInitioLoopClosureMover::fresh_instance ( ) const
overridevirtual

required in the context of the parser/scripting scheme

Reimplemented from protocols::moves::Mover.

core::scoring::ScoreFunctionOP protocols::fold_from_loops::movers::NubInitioLoopClosureMover::fullatom_scorefxn ( ) const

fullatom_score is used to pack sidechains after the closure

References fullatom_scorefxn_.

Referenced by parse_my_tag().

void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::fullatom_scorefxn ( core::scoring::ScoreFunctionOP const &  scorefxn)

References fullatom_scorefxn_.

std::string protocols::fold_from_loops::movers::NubInitioLoopClosureMover::get_name ( ) const
overridevirtual

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

References mover_name().

Referenced by apply().

bool protocols::fold_from_loops::movers::NubInitioLoopClosureMover::has_cutpoints ( core::pose::Pose const &  pose) const
private

Check if there are cutpoints in the Pose.

References core::select::residue_selector::has_any_true_selection().

Referenced by apply().

bool protocols::fold_from_loops::movers::NubInitioLoopClosureMover::has_movable_residues ( core::pose::Pose const &  pose) const
private

This mover works only when there are residues labeled TEMPLATE of FLEXIBLE. If there are no residues labeled like so, CCD closure will be unable to close and will end up reporting a failure.

References core::select::residue_selector::has_any_true_selection(), and movable_residues().

Referenced by apply().

bool protocols::fold_from_loops::movers::NubInitioLoopClosureMover::is_cutpoint_close ( core::pose::Pose const &  pose,
core::Size const &  residue,
bool  by_variant = false 
) const
private

Evaluate if the supossed cutpoint has already been fixed. It is assumed that one previously check if the residue is cutpoint.

References core::chemical::CUTPOINT_LOWER, core::conformation::Residue::has_variant_type(), core::pose::Pose::residue(), and core::conformation::Residue::xyz().

Referenced by apply_closure_trust().

bool protocols::fold_from_loops::movers::NubInitioLoopClosureMover::label ( ) const

if true, label the resiudes that have moved or been repacked during the Mover.

References label_.

Referenced by parse_my_tag(), and protocols::fold_from_loops::NubInitioMover::post_process().

void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::label ( bool  pick)

References label_.

core::kinematics::MoveMapOP protocols::fold_from_loops::movers::NubInitioLoopClosureMover::loop_closure_movemap ( core::pose::Pose const &  pose)
private

Generates the movemap for loop_closure.

References active_movable_residues(), and core::select::movemap::mm_enable.

Referenced by apply().

void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::make_cutpoints_coherent_to_foldtree ( core::pose::Pose pose) const
private
core::kinematics::FoldTree protocols::fold_from_loops::movers::NubInitioLoopClosureMover::make_final_tree ( core::pose::Pose const &  pose) const
private
void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::make_foldtree_coherent_to_cutpoints ( core::pose::Pose pose) const
private

Re-check FoldTree according to residue variant.

References apply_closure_trust().

Referenced by apply().

void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::max_trials ( core::Size  choice)

set how many times we try to close the loops before accepting we cannot

References max_trials_.

core::Size protocols::fold_from_loops::movers::NubInitioLoopClosureMover::max_trials ( ) const

References max_trials_.

Referenced by parse_my_tag().

core::select::residue_selector::ResidueSelectorOP protocols::fold_from_loops::movers::NubInitioLoopClosureMover::movable_residues ( ) const
private

Selector to pick residues labeled TEMPLATE or FLEXIBLE; the only ones that can be allowed to move.

Referenced by active_movable_residues(), and has_movable_residues().

std::string protocols::fold_from_loops::movers::NubInitioLoopClosureMover::mover_name ( )
static
core::select::residue_selector::ResidueSelectorOP protocols::fold_from_loops::movers::NubInitioLoopClosureMover::packable_residues ( ) const
private

Selector to pick residues labeled TEMPLATE, FLEXIBLE or COLDSPOT.

Referenced by active_packable_residues().

void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap &  data 
)
overridevirtual
void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::repack ( core::pose::Pose pose)
private
core::scoring::ScoreFunctionOP protocols::fold_from_loops::movers::NubInitioLoopClosureMover::set_centroid_default_chainclosure_weight ( core::scoring::ScoreFunctionOP const &  scorefxn)
staticprivate
void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::show_cutpoints ( core::pose::Pose const &  pose) const
private
bool protocols::fold_from_loops::movers::NubInitioLoopClosureMover::trust ( ) const

if true, trust the residue variants to locate chain breaks; otherwise use the FoldTree

References trust_.

Referenced by parse_my_tag().

void protocols::fold_from_loops::movers::NubInitioLoopClosureMover::trust ( bool  pick)

References trust_.

Member Data Documentation

core::select::residue_selector::ReturnResidueSubsetSelector protocols::fold_from_loops::movers::NubInitioLoopClosureMover::altered_residues_
private
core::Size protocols::fold_from_loops::movers::NubInitioLoopClosureMover::break_side_
private
bool protocols::fold_from_loops::movers::NubInitioLoopClosureMover::break_side_ramp_
private

Referenced by apply(), and break_side_ramp().

core::Size protocols::fold_from_loops::movers::NubInitioLoopClosureMover::break_side_ramp_value_
private

Referenced by active_movable_residues(), and apply().

bool protocols::fold_from_loops::movers::NubInitioLoopClosureMover::centroid_
private

Referenced by apply(), and centroid().

core::scoring::ScoreFunctionOP protocols::fold_from_loops::movers::NubInitioLoopClosureMover::centroid_scorefxn_
private

Referenced by apply(), and centroid_scorefxn().

bool protocols::fold_from_loops::movers::NubInitioLoopClosureMover::design_
private

Referenced by design(), and repack().

core::fragment::FragSetOP protocols::fold_from_loops::movers::NubInitioLoopClosureMover::fragments_
private

Referenced by apply(), fragments(), and parse_my_tag().

std::string protocols::fold_from_loops::movers::NubInitioLoopClosureMover::fragments_id_
private

Referenced by fragments_id(), and parse_my_tag().

core::scoring::ScoreFunctionOP protocols::fold_from_loops::movers::NubInitioLoopClosureMover::fullatom_scorefxn_
private

Referenced by fullatom_scorefxn(), and repack().

bool protocols::fold_from_loops::movers::NubInitioLoopClosureMover::label_
private

Referenced by apply(), label(), and repack().

core::Real protocols::fold_from_loops::movers::NubInitioLoopClosureMover::max_trials_
private

Referenced by apply(), and max_trials().

bool protocols::fold_from_loops::movers::NubInitioLoopClosureMover::trust_
private

Referenced by apply(), apply_closure_trust(), and trust().


The documentation for this class was generated from the following files: