Rosetta
Classes | Typedefs | Functions | Variables
core::import_pose::libraries Namespace Reference

Classes

class  BasePairStepSequence
 
class  BasePairStepLibrary
 
class  ChunkSet
 
class  RNA_ChunkLibrary
 
class  BasePairType
 
class  RNA_PairingTemplate
 
class  RNA_JumpLibrary
 
class  RNA_LibraryManager
 Holds all libraries relevant to FARFAR as CONST copies: More...
 

Typedefs

typedef utility::pointer::shared_ptr< BasePairStepLibraryBasePairStepLibraryOP
 
typedef utility::pointer::shared_ptr< BasePairStepLibrary const > BasePairStepLibraryCOP
 
typedef utility::pointer::shared_ptr< ChunkSetChunkSetOP
 
typedef utility::pointer::shared_ptr< ChunkSet const > ChunkSetCOP
 
typedef utility::pointer::shared_ptr< RNA_ChunkLibraryRNA_ChunkLibraryOP
 
typedef utility::pointer::shared_ptr< RNA_ChunkLibrary const > RNA_ChunkLibraryCOP
 
typedef utility::pointer::shared_ptr< RNA_JumpLibraryRNA_JumpLibraryOP
 
typedef utility::pointer::shared_ptr< RNA_JumpLibrary const > RNA_JumpLibraryCOP
 
typedef utility::pointer::shared_ptr< RNA_PairingTemplateRNA_PairingTemplateOP
 
typedef utility::vector1< RNA_PairingTemplateOPRNA_PairingTemplateList
 
typedef std::map< BasePairType, RNA_PairingTemplateListRNA_PairingTemplateMap
 
typedef utility::pointer::shared_ptr< RNA_LibraryManagerRNA_LibraryManagerOP
 
typedef utility::pointer::shared_ptr< RNA_LibraryManager const > RNA_LibraryManagerCOP
 

Functions

std::ostream & operator<< (std::ostream &os, BasePairStepSequence const &bps)
 
utility::vector1< std::string > remove_terminus_variant_types_for_rna (utility::vector1< std::string > const &types, char seq)
 
Size const ROSETTA_LIBRARY_DOMAIN (1000)
 
bool check_base_pair_step_availability (BasePairStepLibrary const &base_pair_step_library, BasePairStepSequence const &base_pair_step_sequence)
 
static basic::Tracer tr ("protocols.rna.denovo.libraries.RNA_JumpLibrary")
 
char one_letter_from_rt (chemical::ResidueType const &rt)
 

Variables

core::Size const ROSETTA_LIBRARY_DOMAIN
 

Typedef Documentation

◆ BasePairStepLibraryCOP

typedef utility::pointer::shared_ptr< BasePairStepLibrary const > core::import_pose::libraries::BasePairStepLibraryCOP

◆ BasePairStepLibraryOP

◆ ChunkSetCOP

typedef utility::pointer::shared_ptr< ChunkSet const > core::import_pose::libraries::ChunkSetCOP

◆ ChunkSetOP

typedef utility::pointer::shared_ptr< ChunkSet > core::import_pose::libraries::ChunkSetOP

◆ RNA_ChunkLibraryCOP

typedef utility::pointer::shared_ptr< RNA_ChunkLibrary const > core::import_pose::libraries::RNA_ChunkLibraryCOP

◆ RNA_ChunkLibraryOP

typedef utility::pointer::shared_ptr< RNA_ChunkLibrary > core::import_pose::libraries::RNA_ChunkLibraryOP

◆ RNA_JumpLibraryCOP

typedef utility::pointer::shared_ptr< RNA_JumpLibrary const > core::import_pose::libraries::RNA_JumpLibraryCOP

◆ RNA_JumpLibraryOP

typedef utility::pointer::shared_ptr< RNA_JumpLibrary > core::import_pose::libraries::RNA_JumpLibraryOP

◆ RNA_LibraryManagerCOP

typedef utility::pointer::shared_ptr< RNA_LibraryManager const > core::import_pose::libraries::RNA_LibraryManagerCOP

◆ RNA_LibraryManagerOP

◆ RNA_PairingTemplateList

◆ RNA_PairingTemplateMap

◆ RNA_PairingTemplateOP

Function Documentation

◆ check_base_pair_step_availability()

bool core::import_pose::libraries::check_base_pair_step_availability ( BasePairStepLibrary const &  base_pair_step_library,
BasePairStepSequence const &  base_pair_step_sequence 
)

◆ one_letter_from_rt()

char core::import_pose::libraries::one_letter_from_rt ( chemical::ResidueType const &  rt)

◆ operator<<()

std::ostream& core::import_pose::libraries::operator<< ( std::ostream &  os,
BasePairStepSequence const &  bps 
)

◆ remove_terminus_variant_types_for_rna()

utility::vector1< std::string > core::import_pose::libraries::remove_terminus_variant_types_for_rna ( utility::vector1< std::string > const &  types,
char  seq 
)

◆ ROSETTA_LIBRARY_DOMAIN()

Size const core::import_pose::libraries::ROSETTA_LIBRARY_DOMAIN ( 1000  )

◆ tr()

static basic::Tracer core::import_pose::libraries::tr ( "protocols.rna.denovo.libraries.RNA_JumpLibrary"  )
static

Variable Documentation

◆ ROSETTA_LIBRARY_DOMAIN

core::Size const core::import_pose::libraries::ROSETTA_LIBRARY_DOMAIN
extern