Rosetta  2020.37
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Classes | Typedefs | Functions | Variables
core::import_pose::libraries Namespace Reference

Classes

class  BasePairStepLibrary
 
class  BasePairStepSequence
 
class  BasePairType
 
class  ChunkSet
 
class  RNA_ChunkLibrary
 
class  RNA_JumpLibrary
 
class  RNA_LibraryManager
 Holds all libraries relevant to FARFAR as CONST copies: More...
 
class  RNA_PairingTemplate
 

Typedefs

typedef
utility::pointer::shared_ptr
< BasePairStepLibrary
BasePairStepLibraryOP
 
typedef
utility::pointer::shared_ptr
< BasePairStepLibrary const > 
BasePairStepLibraryCOP
 
typedef
utility::pointer::shared_ptr
< ChunkSet
ChunkSetOP
 
typedef
utility::pointer::shared_ptr
< ChunkSet const > 
ChunkSetCOP
 
typedef
utility::pointer::shared_ptr
< RNA_ChunkLibrary
RNA_ChunkLibraryOP
 
typedef
utility::pointer::shared_ptr
< RNA_ChunkLibrary const > 
RNA_ChunkLibraryCOP
 
typedef
utility::pointer::shared_ptr
< RNA_JumpLibrary
RNA_JumpLibraryOP
 
typedef
utility::pointer::shared_ptr
< RNA_JumpLibrary const > 
RNA_JumpLibraryCOP
 
typedef
utility::pointer::shared_ptr
< RNA_PairingTemplate
RNA_PairingTemplateOP
 
typedef utility::vector1
< RNA_PairingTemplateOP
RNA_PairingTemplateList
 
typedef std::map< BasePairType,
RNA_PairingTemplateList
RNA_PairingTemplateMap
 
typedef
utility::pointer::shared_ptr
< RNA_LibraryManager
RNA_LibraryManagerOP
 
typedef
utility::pointer::shared_ptr
< RNA_LibraryManager const > 
RNA_LibraryManagerCOP
 

Functions

std::ostream & operator<< (std::ostream &os, BasePairStepSequence const &bps)
 
utility::vector1< std::string > remove_terminus_variant_types_for_rna (utility::vector1< std::string > const &types, char seq)
 
Size const ROSETTA_LIBRARY_DOMAIN (1000)
 
bool check_base_pair_step_availability (BasePairStepLibrary const &base_pair_step_library, BasePairStepSequence const &base_pair_step_sequence)
 
static basic::Tracer tr ("protocols.rna.denovo.libraries.RNA_JumpLibrary")
 
char one_letter_from_rt (chemical::ResidueType const &rt)
 

Variables

core::Size const ROSETTA_LIBRARY_DOMAIN
 

Typedef Documentation

typedef utility::pointer::shared_ptr< BasePairStepLibrary const > core::import_pose::libraries::BasePairStepLibraryCOP
typedef utility::pointer::shared_ptr< ChunkSet const > core::import_pose::libraries::ChunkSetCOP
typedef utility::pointer::shared_ptr< ChunkSet > core::import_pose::libraries::ChunkSetOP
typedef utility::pointer::shared_ptr< RNA_ChunkLibrary const > core::import_pose::libraries::RNA_ChunkLibraryCOP
typedef utility::pointer::shared_ptr< RNA_ChunkLibrary > core::import_pose::libraries::RNA_ChunkLibraryOP
typedef utility::pointer::shared_ptr< RNA_JumpLibrary const > core::import_pose::libraries::RNA_JumpLibraryCOP
typedef utility::pointer::shared_ptr< RNA_JumpLibrary > core::import_pose::libraries::RNA_JumpLibraryOP
typedef utility::pointer::shared_ptr< RNA_LibraryManager const > core::import_pose::libraries::RNA_LibraryManagerCOP

Function Documentation

bool core::import_pose::libraries::check_base_pair_step_availability ( BasePairStepLibrary const &  base_pair_step_library,
BasePairStepSequence const &  base_pair_step_sequence 
)
char core::import_pose::libraries::one_letter_from_rt ( chemical::ResidueType const &  rt)
std::ostream& core::import_pose::libraries::operator<< ( std::ostream &  os,
BasePairStepSequence const &  bps 
)
utility::vector1< std::string > core::import_pose::libraries::remove_terminus_variant_types_for_rna ( utility::vector1< std::string > const &  types,
char  seq 
)
Size const core::import_pose::libraries::ROSETTA_LIBRARY_DOMAIN ( 1000  )
static basic::Tracer core::import_pose::libraries::tr ( "protocols.rna.denovo.libraries.RNA_JumpLibrary"  )
static

Variable Documentation

core::Size const core::import_pose::libraries::ROSETTA_LIBRARY_DOMAIN