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protocols::frag_picker::scores::ProfileScoreSubMatrix Member List

This is the complete list of members for protocols::frag_picker::scores::ProfileScoreSubMatrix, including all inherited members.

cached_score(FragmentCandidateOP, FragmentScoreMapOP) overrideprotocols::frag_picker::scores::ProfileScoreSubMatrixvirtual
cached_scores_id_protocols::frag_picker::scores::ProfileScoreSubMatrixprivate
CachingScoringMethod(core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string name)protocols::frag_picker::scores::CachingScoringMethodinline
clean_up() overrideprotocols::frag_picker::scores::ProfileScoreSubMatrixinlinevirtual
clear()protocols::frag_picker::scores::ProfileScoreSubMatrixprivate
do_caching(VallChunkOP) overrideprotocols::frag_picker::scores::ProfileScoreSubMatrixvirtual
FragmentScoringMethod(core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string name)protocols::frag_picker::scores::FragmentScoringMethodinline
get_id()protocols::frag_picker::scores::FragmentScoringMethodinline
get_min_allowed_score()protocols::frag_picker::scores::FragmentScoringMethodinline
get_priority()protocols::frag_picker::scores::FragmentScoringMethodinline
get_score_name()protocols::frag_picker::scores::FragmentScoringMethodinline
get_use_lowest()protocols::frag_picker::scores::FragmentScoringMethodinline
id_protocols::frag_picker::scores::FragmentScoringMethodprotected
lowest_acceptable_value_protocols::frag_picker::scores::FragmentScoringMethodprotected
name_protocols::frag_picker::scores::FragmentScoringMethodprotected
priority_protocols::frag_picker::scores::FragmentScoringMethodprotected
ProfileScoreSubMatrix(core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string sequence, core::Size longest_vall_chunk, std::string subMatrixFile)protocols::frag_picker::scores::ProfileScoreSubMatrix
score(FragmentCandidateOP, FragmentScoreMapOP) overrideprotocols::frag_picker::scores::ProfileScoreSubMatrixvirtual
scores_protocols::frag_picker::scores::ProfileScoreSubMatrixprotected
sequence_protocols::frag_picker::scores::ProfileScoreSubMatrixprivate
set_id(core::Size id)protocols::frag_picker::scores::FragmentScoringMethodinline
set_min_allowed_score(core::Real lowest_acceptable_value)protocols::frag_picker::scores::FragmentScoringMethodinline
sub_matrix_protocols::frag_picker::scores::ProfileScoreSubMatrixprivate
subMatrixFile_protocols::frag_picker::scores::ProfileScoreSubMatrixprivate
use_lowest_protocols::frag_picker::scores::FragmentScoringMethodprotected
~ProfileScoreSubMatrix() overrideprotocols::frag_picker::scores::ProfileScoreSubMatrix