Rosetta  2020.37
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protocols::simple_filters::NMerPSSMEnergyFilter Class Reference

#include <NMerPSSMEnergyFilter.hh>

Inheritance diagram for protocols::simple_filters::NMerPSSMEnergyFilter:
Inheritance graph

Public Member Functions

 NMerPSSMEnergyFilter ()
 NMerPSSMEnergyFilter (core::Real const score_type_threshold, std::string string_resnums)
bool apply (core::pose::Pose const &pose) const override
 Returns true if the given pose passes the filter, false otherwise. More...
filters::FilterOP clone () const override
filters::FilterOP fresh_instance () const override
void report (std::ostream &out, core::pose::Pose const &pose) const override
core::Real report_sm (core::pose::Pose const &pose) const override
 used to report filter internals through a score or silent file More...
core::Real compute_residue (core::pose::Pose const &pose, core::Size const seqpos) const
core::Real compute (core::pose::Pose const &pose) const
 ~NMerPSSMEnergyFilter () override
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
std::string name () const override
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 Filter (std::string const &)
 Filter (Filter const &)
 ~Filter () override
virtual std::string get_type () const
std::string get_user_defined_name () const
void set_user_defined_name (std::string const &name)
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real score (core::pose::Pose &pose)
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...

Static Public Member Functions

static std::string class_name ()
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes

core::Real score_type_threshold_
std::string string_resnums_
core::scoring::methods::NMerPSSMEnergy energy_method_

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_

Constructor & Destructor Documentation

protocols::simple_filters::NMerPSSMEnergyFilter::NMerPSSMEnergyFilter ( )
protocols::simple_filters::NMerPSSMEnergyFilter::NMerPSSMEnergyFilter ( core::Real const  score_type_threshold,
std::string  string_resnums 
protocols::simple_filters::NMerPSSMEnergyFilter::~NMerPSSMEnergyFilter ( )

Member Function Documentation

bool protocols::simple_filters::NMerPSSMEnergyFilter::apply ( core::pose::Pose const &  pose) const

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), protocols::filters::Filter::score(), score_type_threshold_, and protocols::simple_filters::TR().

std::string protocols::simple_filters::NMerPSSMEnergyFilter::class_name ( )
filters::FilterOP protocols::simple_filters::NMerPSSMEnergyFilter::clone ( ) const
core::Real protocols::simple_filters::NMerPSSMEnergyFilter::compute ( core::pose::Pose const &  pose) const
core::Real protocols::simple_filters::NMerPSSMEnergyFilter::compute_residue ( core::pose::Pose const &  pose,
core::Size const  seqpos 
) const
filters::FilterOP protocols::simple_filters::NMerPSSMEnergyFilter::fresh_instance ( ) const
std::string protocols::simple_filters::NMerPSSMEnergyFilter::name ( ) const

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::simple_filters::NMerPSSMEnergyFilter::parse_my_tag ( utility::tag::TagCOP  ,
basic::datacache::DataMap &   
void protocols::simple_filters::NMerPSSMEnergyFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
void protocols::simple_filters::NMerPSSMEnergyFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::simple_filters::NMerPSSMEnergyFilter::report_sm ( core::pose::Pose const &  ) const

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

core::scoring::methods::NMerPSSMEnergy protocols::simple_filters::NMerPSSMEnergyFilter::energy_method_

Referenced by compute_residue(), and parse_my_tag().

core::Real protocols::simple_filters::NMerPSSMEnergyFilter::score_type_threshold_
std::string protocols::simple_filters::NMerPSSMEnergyFilter::string_resnums_

The documentation for this class was generated from the following files: