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Classes | Typedefs | Functions
protocols::sewing::scoring Namespace Reference

Classes

class  AssemblyScorer
 an interface for making Requirements that deal with Assemblies More...
 
class  AssemblyScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  AssemblyScorerFactory
 Create AssemblyScorers. More...
 
class  AssemblyScorerRegistrator
 This templated class will register an instance of an RequirementCreator (class T) with the RequirementFactory. It will ensure that no RequirementCreator is registered twice, and, centralizes this registration logic so that thread safety issues can be handled in one place. More...
 
class  InterModelMotifScorer
 
class  InterModelMotifScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  IntraDesignTerminusMotifScorer
 
class  IntraDesignTerminusMotifScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  LigandAssemblyScorer
 an interface for making Requirements that deal with Assemblies More...
 
class  LigandScorer
 
class  LigandScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  MotifScorer
 
class  MotifScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  PartnerMotifScorer
 
class  PartnerMotifScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  SegmentContactOrderScorer
 
class  SegmentContactOrderScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  StartingNodeMotifScorer
 
class  StartingNodeMotifScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  SubsetPartnerMotifScorer
 
class  SubsetPartnerMotifScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  TerminusMotifScorer
 
class  TerminusMotifScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  TopNMotifScorer
 
class  TopNMotifScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 

Typedefs

typedef
utility::pointer::shared_ptr
< AssemblyScorer
AssemblyScorerOP
 
typedef
utility::pointer::shared_ptr
< AssemblyScorer const > 
AssemblyScorerCOP
 
typedef
utility::pointer::shared_ptr
< AssemblyScorerCreator
AssemblyScorerCreatorOP
 
typedef
utility::pointer::shared_ptr
< AssemblyScorerCreator const > 
AssemblyScorerCreatorCOP
 
typedef
utility::pointer::shared_ptr
< InterModelMotifScorer
InterModelMotifScorerOP
 
typedef
utility::pointer::shared_ptr
< InterModelMotifScorer const > 
InterModelMotifScorerCOP
 
typedef
utility::pointer::shared_ptr
< InterModelMotifScorerCreator
InterModelMotifScorerCreatorOP
 
typedef
utility::pointer::shared_ptr
< InterModelMotifScorerCreator
const > 
InterModelMotifScorerCreatorCOP
 
typedef
utility::pointer::shared_ptr
< IntraDesignTerminusMotifScorer
IntraDesignTerminusMotifScorerOP
 
typedef
utility::pointer::shared_ptr
< IntraDesignTerminusMotifScorer
const > 
IntraDesignTerminusMotifScorerCOP
 
typedef
utility::pointer::shared_ptr
< IntraDesignTerminusMotifScorerCreator
IntraDesignTerminusMotifScorerCreatorOP
 
typedef
utility::pointer::shared_ptr
< IntraDesignTerminusMotifScorerCreator
const > 
IntraDesignTerminusMotifScorerCreatorCOP
 
typedef
utility::pointer::shared_ptr
< LigandAssemblyScorer
LigandAssemblyScorerOP
 
typedef
utility::pointer::shared_ptr
< LigandAssemblyScorer const > 
LigandAssemblyScorerCOP
 
typedef
utility::pointer::shared_ptr
< LigandScorer
LigandScorerOP
 
typedef
utility::pointer::shared_ptr
< LigandScorer const > 
LigandScorerCOP
 
typedef
utility::pointer::shared_ptr
< LigandScorerCreator
LigandScorerCreatorOP
 
typedef
utility::pointer::shared_ptr
< LigandScorerCreator const > 
LigandScorerCreatorCOP
 
typedef
utility::pointer::shared_ptr
< MotifScorer
MotifScorerOP
 
typedef
utility::pointer::shared_ptr
< MotifScorer const > 
MotifScorerCOP
 
typedef
utility::pointer::shared_ptr
< MotifScorerCreator
MotifScorerCreatorOP
 
typedef
utility::pointer::shared_ptr
< MotifScorerCreator const > 
MotifScorerCreatorCOP
 
typedef
utility::pointer::shared_ptr
< PartnerMotifScorer
PartnerMotifScorerOP
 
typedef
utility::pointer::shared_ptr
< PartnerMotifScorer const > 
PartnerMotifScorerCOP
 
typedef
utility::pointer::shared_ptr
< PartnerMotifScorerCreator
PartnerMotifScorerCreatorOP
 
typedef
utility::pointer::shared_ptr
< PartnerMotifScorerCreator
const > 
PartnerMotifScorerCreatorCOP
 
typedef
utility::pointer::shared_ptr
< SegmentContactOrderScorer
SegmentContactOrderScorerOP
 
typedef
utility::pointer::shared_ptr
< SegmentContactOrderScorer
const > 
SegmentContactOrderScorerCOP
 
typedef
utility::pointer::shared_ptr
< SegmentContactOrderScorerCreator
SegmentContactOrderScorerCreatorOP
 
typedef
utility::pointer::shared_ptr
< SegmentContactOrderScorerCreator
const > 
SegmentContactOrderScorerCreatorCOP
 
typedef
utility::pointer::shared_ptr
< StartingNodeMotifScorer
StartingNodeMotifScorerOP
 
typedef
utility::pointer::shared_ptr
< StartingNodeMotifScorer
const > 
StartingNodeMotifScorerCOP
 
typedef
utility::pointer::shared_ptr
< StartingNodeMotifScorerCreator
StartingNodeMotifScorerCreatorOP
 
typedef
utility::pointer::shared_ptr
< StartingNodeMotifScorerCreator
const > 
StartingNodeMotifScorerCreatorCOP
 
typedef
utility::pointer::shared_ptr
< SubsetPartnerMotifScorer
SubsetPartnerMotifScorerOP
 
typedef
utility::pointer::shared_ptr
< SubsetPartnerMotifScorer
const > 
SubsetPartnerMotifScorerCOP
 
typedef
utility::pointer::shared_ptr
< SubsetPartnerMotifScorerCreator
SubsetPartnerMotifScorerCreatorOP
 
typedef
utility::pointer::shared_ptr
< SubsetPartnerMotifScorerCreator
const > 
SubsetPartnerMotifScorerCreatorCOP
 
typedef
utility::pointer::shared_ptr
< TerminusMotifScorer
TerminusMotifScorerOP
 
typedef
utility::pointer::shared_ptr
< TerminusMotifScorer const > 
TerminusMotifScorerCOP
 
typedef
utility::pointer::shared_ptr
< TerminusMotifScorerCreator
TerminusMotifScorerCreatorOP
 
typedef
utility::pointer::shared_ptr
< TerminusMotifScorerCreator
const > 
TerminusMotifScorerCreatorCOP
 
typedef
utility::pointer::shared_ptr
< TopNMotifScorer
TopNMotifScorerOP
 
typedef
utility::pointer::shared_ptr
< TopNMotifScorer const > 
TopNMotifScorerCOP
 
typedef
utility::pointer::shared_ptr
< TopNMotifScorerCreator
TopNMotifScorerCreatorOP
 
typedef
utility::pointer::shared_ptr
< TopNMotifScorerCreator const > 
TopNMotifScorerCreatorCOP
 

Functions

static basic::Tracer TR ("protocols.sewing.scoring.AssemblyScorerFactory")
 
static basic::Tracer TR ("protocols.sewing.scoring.InterModelMotifScorer")
 
static basic::Tracer TR ("protocols.sewing.scoring.IntraDesignTerminusMotifScorer")
 
static basic::Tracer TR ("protocols.sewing.scoring.LigandScorer")
 
static basic::Tracer TR ("protocols.sewing.scoring.MotifScorer")
 
static basic::Tracer TR ("protocols.sewing.scoring.PartnerMotifScorer")
 
static basic::Tracer TR ("protocols.sewing.scoring.SegmentContactOrderScorer")
 
static basic::Tracer TR ("protocols.sewing.scoring.StartingNodeMotifScorer")
 
static basic::Tracer TR ("protocols.sewing.scoring.SubsetPartnerMotifScorer")
 
static basic::Tracer TR ("protocols.sewing.scoring.TerminusMotifScorer")
 
static basic::Tracer TR ("protocols.sewing.scoring.TopNMotifScorer")
 

Typedef Documentation

typedef utility::pointer::shared_ptr< AssemblyScorer const > protocols::sewing::scoring::AssemblyScorerCOP
typedef utility::pointer::shared_ptr< AssemblyScorerCreator const > protocols::sewing::scoring::AssemblyScorerCreatorCOP
typedef utility::pointer::shared_ptr< AssemblyScorer > protocols::sewing::scoring::AssemblyScorerOP
typedef utility::pointer::shared_ptr< InterModelMotifScorer const > protocols::sewing::scoring::InterModelMotifScorerCOP
typedef utility::pointer::shared_ptr< LigandAssemblyScorer const > protocols::sewing::scoring::LigandAssemblyScorerCOP
typedef utility::pointer::shared_ptr< LigandScorer const > protocols::sewing::scoring::LigandScorerCOP
typedef utility::pointer::shared_ptr< LigandScorerCreator const > protocols::sewing::scoring::LigandScorerCreatorCOP
typedef utility::pointer::shared_ptr< LigandScorer > protocols::sewing::scoring::LigandScorerOP
typedef utility::pointer::shared_ptr< MotifScorer const > protocols::sewing::scoring::MotifScorerCOP
typedef utility::pointer::shared_ptr< MotifScorerCreator const > protocols::sewing::scoring::MotifScorerCreatorCOP
typedef utility::pointer::shared_ptr< MotifScorer > protocols::sewing::scoring::MotifScorerOP
typedef utility::pointer::shared_ptr< PartnerMotifScorer const > protocols::sewing::scoring::PartnerMotifScorerCOP
typedef utility::pointer::shared_ptr< TerminusMotifScorer const > protocols::sewing::scoring::TerminusMotifScorerCOP
typedef utility::pointer::shared_ptr< TopNMotifScorer const > protocols::sewing::scoring::TopNMotifScorerCOP
typedef utility::pointer::shared_ptr< TopNMotifScorer > protocols::sewing::scoring::TopNMotifScorerOP

Function Documentation

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.PartnerMotifScorer"  )
static
static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.SubsetPartnerMotifScorer"  )
static
static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.AssemblyScorerFactory"  )
static
static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.MotifScorer"  )
static
static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.SegmentContactOrderScorer"  )
static
static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.StartingNodeMotifScorer"  )
static
static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.InterModelMotifScorer"  )
static
static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.TopNMotifScorer"  )
static
static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.TerminusMotifScorer"  )
static
static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.IntraDesignTerminusMotifScorer"  )
static
static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.LigandScorer"  )
static