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protocols::simple_moves::ResTypeFragmentMover Member List

This is the complete list of members for protocols::simple_moves::ResTypeFragmentMover, including all inherited members.

apply(core::pose::Pose &) overrideprotocols::simple_moves::ClassicFragmentMovervirtual
apply(core::pose::Pose &, core::Size pos) constprotocols::simple_moves::ClassicFragmentMover
apply(Pose &)=0protocols::simple_moves::ClassicFragmentMover
protocols::simple_moves::FragmentMover::apply(core::pose::Pose &, core::Size pos) constprotocols::simple_moves::FragmentMovervirtual
apply_at_all_positions(core::pose::Pose &) constprotocols::simple_moves::FragmentMovervirtual
apply_fragment(core::fragment::Frame const &frame, core::Size frag_num, core::kinematics::MoveMap const &movemap, core::pose::Pose &pose) constprotocols::simple_moves::ClassicFragmentMovervirtual
apply_frames(core::pose::Pose &pose, core::fragment::FrameList const &frames) const overrideprotocols::simple_moves::ResTypeFragmentMoverprotectedvirtual
bApplyEndBias_protocols::simple_moves::ClassicFragmentMoverprivate
check_ss() constprotocols::simple_moves::ClassicFragmentMoverinline
check_ss_protocols::simple_moves::ClassicFragmentMoverprivate
choose_fragment(core::fragment::FrameList const &, core::pose::Pose const &, core::Size &frame_num, core::Size &frag_num) constprotocols::simple_moves::ClassicFragmentMovervirtual
choose_window_length(core::pose::Pose const &, core::Size &window_length) constprotocols::simple_moves::ClassicFragmentMoverinlinevirtual
choose_window_start(core::pose::Pose const &, core::Size window_length, core::Size &window_start) constprotocols::simple_moves::ClassicFragmentMovervirtual
ClassicFragmentMover()protocols::simple_moves::ClassicFragmentMover
ClassicFragmentMover(core::fragment::FragSetCOP fragset)protocols::simple_moves::ClassicFragmentMover
ClassicFragmentMover(core::fragment::FragSetCOP fragset, core::kinematics::MoveMapCOP movemap)protocols::simple_moves::ClassicFragmentMover
ClassicFragmentMover(core::fragment::ConstantLengthFragSet const &fragset, core::kinematics::MoveMap const &movemap)protocols::simple_moves::ClassicFragmentMover
ClassicFragmentMover(core::fragment::FragSetCOP fragset, core::kinematics::MoveMapCOP movemap, std::string type)protocols::simple_moves::ClassicFragmentMoverprotected
ClassicFragmentMover(core::fragment::FragSetCOP fragset, std::string type)protocols::simple_moves::ClassicFragmentMoverprotected
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::simple_moves::ClassicFragmentMovervirtual
create()protocols::moves::Movervirtual
current_job_protocols::moves::Moverprivate
current_tag_protocols::moves::Moverprivate
define_start_window(core::Size window_start)protocols::simple_moves::ClassicFragmentMover
enable_end_bias_check(bool setting=true)protocols::simple_moves::ClassicFragmentMoverinline
end_bias() constprotocols::simple_moves::ClassicFragmentMoverinline
end_bias_protocols::simple_moves::ClassicFragmentMoverprivate
end_bias_check(core::pose::Pose const &, core::Size window_start) constprotocols::simple_moves::ClassicFragmentMovervirtual
end_bias_check_enabled() constprotocols::simple_moves::ClassicFragmentMoverinline
FragmentMover(std::string const &type)protocols::simple_moves::FragmentMoverprotected
FragmentMover(core::fragment::FragSetCOP fragset, std::string const &type)protocols::simple_moves::FragmentMoverprotected
FragmentMover(core::fragment::FragSetCOP fragset, core::kinematics::MoveMapCOP movemap, std::string const &type)protocols::simple_moves::FragmentMoverprotected
fragments() constprotocols::simple_moves::FragmentMover
fragset_protocols::simple_moves::FragmentMoverprotected
fresh_instance() const overrideprotocols::simple_moves::ClassicFragmentMovervirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() constprotocols::moves::Mover
get_current_tag() constprotocols::moves::Moverinline
get_input_pose() constprotocols::moves::Mover
get_last_move_status() constprotocols::moves::Mover
get_name() const overrideprotocols::simple_moves::ClassicFragmentMovervirtual
get_native_pose() constprotocols::moves::Mover
get_self_ptr() constprotocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() constprotocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() constprotocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() constprotocols::moves::Moverinlinevirtual
info_protocols::moves::Moverprivate
initialize(core::pose::Pose &)protocols::moves::MoveMapMoverinlinevirtual
input_pose_protocols::moves::Moverprivate
insert_map() constprotocols::simple_moves::FragmentMoverinline
insert_map_protocols::simple_moves::FragmentMoverprotected
insert_size() constprotocols::simple_moves::FragmentMoverinline
insert_size_protocols::simple_moves::FragmentMoverprotected
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
last_status_protocols::moves::Moverprivate
min_frag_length_protocols::simple_moves::ClassicFragmentMoverprivate
min_overlap_protocols::simple_moves::ClassicFragmentMoverprivate
movemap(core::pose::Pose const &) const overrideprotocols::simple_moves::FragmentMovervirtual
movemap() constprotocols::simple_moves::FragmentMover
movemap_protocols::simple_moves::FragmentMoverprotected
MoveMapMover()protocols::moves::MoveMapMoverinline
MoveMapMover(std::string const &name)protocols::moves::MoveMapMoverinline
MoveMapMover(MoveMapMover const &)=defaultprotocols::moves::MoveMapMover
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
native_pose_protocols::moves::Moverprivate
on_new_fragments() overrideprotocols::simple_moves::ClassicFragmentMoverinlinevirtual
Parent typedefprotocols::simple_moves::ResTypeFragmentMover
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
predefined_window_start_protocols::simple_moves::ClassicFragmentMoverprivate
provide_citation_info(basic::citation_manager::CitationCollectionList &) constprotocols::moves::Movervirtual
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() constprotocols::moves::Movervirtual
reinitialize_for_new_input() constprotocols::moves::Movervirtual
reset_status()protocols::moves::Mover
ResTypeFragmentMover(core::fragment::FragSetCOP fragset)protocols::simple_moves::ResTypeFragmentMover
ResTypeFragmentMover(core::fragment::FragSetCOP fragset, core::kinematics::MoveMapCOP movemap)protocols::simple_moves::ResTypeFragmentMover
set_check_ss(bool setting)protocols::simple_moves::ClassicFragmentMoverinline
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_defaults()protocols::simple_moves::ClassicFragmentMoverprivate
set_end_bias(core::Real setting)protocols::simple_moves::ClassicFragmentMoverinline
set_fragments(core::fragment::FragSetCOP new_frags_)protocols::simple_moves::FragmentMovervirtual
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_min_frag_length(core::Size setting)protocols::simple_moves::ClassicFragmentMoverinline
set_min_overlap(core::Size setting)protocols::simple_moves::ClassicFragmentMoverinline
set_movemap(core::kinematics::MoveMapCOP movemap) overrideprotocols::simple_moves::FragmentMovervirtual
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_type(std::string const &setting)protocols::moves::Moverinline
shared_from_this()protocols::simple_moves::ResTypeFragmentMoverinline
show(std::ostream &output=std::cout) const overrideprotocols::simple_moves::ClassicFragmentMovervirtual
Strings typedefprotocols::moves::Mover
swap_residue_types(core::pose::Pose &pose, std::string const &sequence, core::Size const startSeqPos) constprotocols::simple_moves::ResTypeFragmentMoverprotected
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type(const std::string &type_in)protocols::moves::Moverinline
type() constprotocols::moves::Moverinline
type_protocols::moves::Moverprivate
update_insert_map()protocols::simple_moves::FragmentMoverprotected
use_predefined_window_start_protocols::simple_moves::ClassicFragmentMoverprivate
valid_ss(std::string const &new_ss) constprotocols::simple_moves::ClassicFragmentMovervirtual
~ClassicFragmentMover() overrideprotocols::simple_moves::ClassicFragmentMover
~FragmentMover() overrideprotocols::simple_moves::FragmentMover
~MoveMapMover() override=defaultprotocols::moves::MoveMapMover
~ResTypeFragmentMover() overrideprotocols::simple_moves::ResTypeFragmentMover