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protocols::simple_filters::DeltaFilter Class Reference

#include <DeltaFilter.hh>

Inheritance diagram for protocols::simple_filters::DeltaFilter:
Inheritance graph
[legend]

Public Member Functions

 DeltaFilter ()
 default ctor More...
 
bool apply (core::pose::Pose const &pose) const override
 Constructor with a single target residue. More...
 
void report (std::ostream &out, core::pose::Pose const &pose) const override
 
core::Real report_sm (core::pose::Pose const &pose) const override
 used to report filter internals through a score or silent file More...
 
protocols::filters::FilterOP clone () const override
 
protocols::filters::FilterOP fresh_instance () const override
 
core::Real compute (core::pose::Pose const &pose) const
 
 ~DeltaFilter () override
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
 
void ref_baseline (core::Real const rb)
 
core::Real baseline () const
 
void baseline (core::Real const b)
 
bool lower () const
 
void lower (bool const l)
 
bool upper () const
 
void upper (bool const u)
 
void filter (protocols::filters::FilterOP filter)
 
protocols::filters::FilterOP filter () const
 
core::Real range () const
 
void range (core::Real const r)
 
bool unbound () const
 
void unbound (bool const u)
 
bool relax_unbound () const
 
void relax_unbound (bool const u)
 
bool changing_baseline () const
 
void changing_baseline (bool const c)
 
core::Size jump () const
 
void jump (core::Size const j)
 
protocols::moves::MoverOP relax_mover () const
 
void relax_mover (protocols::moves::MoverOP const mover)
 
void scorefxn (core::scoring::ScoreFunctionOP s)
 
core::scoring::ScoreFunctionOP scorefxn () const
 
std::string name () const override
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
 ~Filter () override
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Types

typedef protocols::filters::Filter parent
 

Private Member Functions

void unbind (core::pose::Pose &) const
 

Private Attributes

protocols::filters::FilterOP filter_
 
core::Real baseline_
 
core::Real range_
 
bool lower_
 
bool upper_
 
bool unbound_
 
bool relax_unbound_
 
bool changing_baseline_
 
core::Size jump_
 
protocols::moves::MoverOP relax_mover_
 
core::pose::PoseCOP reference_pose_
 
core::Real ref_baseline_
 
core::scoring::ScoreFunctionOP scorefxn_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::simple_filters::DeltaFilter::DeltaFilter ( )

default ctor

protocols::simple_filters::DeltaFilter::~DeltaFilter ( )
overridedefault

Member Function Documentation

bool protocols::simple_filters::DeltaFilter::apply ( core::pose::Pose const &  pose) const
overridevirtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

References compute(), lower(), range(), and upper().

core::Real protocols::simple_filters::DeltaFilter::baseline ( ) const
void protocols::simple_filters::DeltaFilter::baseline ( core::Real const  b)
bool protocols::simple_filters::DeltaFilter::changing_baseline ( ) const

References changing_baseline_.

Referenced by parse_my_tag().

void protocols::simple_filters::DeltaFilter::changing_baseline ( bool const  c)
std::string protocols::simple_filters::DeltaFilter::class_name ( )
static
protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::clone ( ) const
overridevirtual
core::Real protocols::simple_filters::DeltaFilter::compute ( core::pose::Pose const &  pose) const
void protocols::simple_filters::DeltaFilter::filter ( protocols::filters::FilterOP  filter)

References filter(), and filter_.

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::filter ( ) const

References filter_.

Referenced by compute(), filter(), and parse_my_tag().

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::fresh_instance ( ) const
overridevirtual
core::Size protocols::simple_filters::DeltaFilter::jump ( ) const

References jump_.

Referenced by parse_my_tag(), and unbind().

void protocols::simple_filters::DeltaFilter::jump ( core::Size const  j)

References jump_.

bool protocols::simple_filters::DeltaFilter::lower ( ) const

References lower_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::DeltaFilter::lower ( bool const  l)

References lower_.

std::string protocols::simple_filters::DeltaFilter::name ( ) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::simple_filters::DeltaFilter::parse_my_tag ( utility::tag::TagCOP  ,
basic::datacache::DataMap &   
)
overridevirtual
void protocols::simple_filters::DeltaFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
core::Real protocols::simple_filters::DeltaFilter::range ( ) const

References range_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::DeltaFilter::range ( core::Real const  r)

References range_.

void protocols::simple_filters::DeltaFilter::ref_baseline ( core::Real const  rb)

References ref_baseline_.

protocols::moves::MoverOP protocols::simple_filters::DeltaFilter::relax_mover ( ) const

References relax_mover_.

Referenced by baseline(), parse_my_tag(), and unbind().

void protocols::simple_filters::DeltaFilter::relax_mover ( protocols::moves::MoverOP const  mover)

References relax_mover_.

bool protocols::simple_filters::DeltaFilter::relax_unbound ( ) const

References relax_unbound_.

Referenced by parse_my_tag(), and unbind().

void protocols::simple_filters::DeltaFilter::relax_unbound ( bool const  u)
void protocols::simple_filters::DeltaFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::simple_filters::DeltaFilter::report_sm ( core::pose::Pose const &  ) const
overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute(), and unbind().

Referenced by compute().

void protocols::simple_filters::DeltaFilter::scorefxn ( core::scoring::ScoreFunctionOP  s)

References scorefxn_.

core::scoring::ScoreFunctionOP protocols::simple_filters::DeltaFilter::scorefxn ( ) const

References scorefxn_.

Referenced by parse_my_tag().

void protocols::simple_filters::DeltaFilter::unbind ( core::pose::Pose pose) const
private
bool protocols::simple_filters::DeltaFilter::unbound ( ) const

References unbound_.

Referenced by parse_my_tag(), and unbind().

void protocols::simple_filters::DeltaFilter::unbound ( bool const  u)
bool protocols::simple_filters::DeltaFilter::upper ( ) const

References upper_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::DeltaFilter::upper ( bool const  u)

Member Data Documentation

core::Real protocols::simple_filters::DeltaFilter::baseline_
private

Referenced by baseline().

bool protocols::simple_filters::DeltaFilter::changing_baseline_
private

Referenced by baseline(), and changing_baseline().

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::filter_
private

Referenced by baseline(), and filter().

core::Size protocols::simple_filters::DeltaFilter::jump_
private

Referenced by jump().

bool protocols::simple_filters::DeltaFilter::lower_
private

Referenced by lower().

core::Real protocols::simple_filters::DeltaFilter::range_
private

Referenced by range().

core::Real protocols::simple_filters::DeltaFilter::ref_baseline_
mutableprivate

Referenced by baseline(), and ref_baseline().

core::pose::PoseCOP protocols::simple_filters::DeltaFilter::reference_pose_
private

Referenced by baseline(), and parse_my_tag().

protocols::moves::MoverOP protocols::simple_filters::DeltaFilter::relax_mover_
private

Referenced by relax_mover().

bool protocols::simple_filters::DeltaFilter::relax_unbound_
private

Referenced by relax_unbound().

core::scoring::ScoreFunctionOP protocols::simple_filters::DeltaFilter::scorefxn_
private

Referenced by scorefxn().

bool protocols::simple_filters::DeltaFilter::unbound_
private

Referenced by unbound().

bool protocols::simple_filters::DeltaFilter::upper_
private

Referenced by upper().


The documentation for this class was generated from the following files: