protocols::simple_filters::DeltaFilter Class Reference

#include <DeltaFilter.hh>

Inheritance diagram for protocols::simple_filters::DeltaFilter:

Public Member Functions
	DeltaFilter ()
	default ctor More...
bool	apply (core::pose::Pose const &pose) const override
	Constructor with a single target residue. More...
void	report (std::ostream &out, core::pose::Pose const &pose) const override
core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...
protocols::filters::FilterOP	clone () const override
protocols::filters::FilterOP	fresh_instance () const override
core::Real	compute (core::pose::Pose const &pose) const
	~DeltaFilter () override
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
void	ref_baseline (core::Real const rb)
core::Real	baseline () const
void	baseline (core::Real const b)
bool	lower () const
void	lower (bool const l)
bool	upper () const
void	upper (bool const u)
void	filter (protocols::filters::FilterOP filter)
protocols::filters::FilterOP	filter () const
core::Real	range () const
void	range (core::Real const r)
bool	unbound () const
void	unbound (bool const u)
bool	relax_unbound () const
void	relax_unbound (bool const u)
bool	changing_baseline () const
void	changing_baseline (bool const c)
core::Size	jump () const
void	jump (core::Size const j)
protocols::moves::MoverOP	relax_mover () const
void	relax_mover (protocols::moves::MoverOP const mover)
void	scorefxn (core::scoring::ScoreFunctionOP s)
core::scoring::ScoreFunctionOP	scorefxn () const
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	~Filter () override
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Types
typedef protocols::filters::Filter	parent

Private Member Functions
void	unbind (core::pose::Pose &) const

Private Attributes
protocols::filters::FilterOP	filter_
core::Real	baseline_
core::Real	range_
bool	lower_
bool	upper_
bool	unbound_
bool	relax_unbound_
bool	changing_baseline_
core::Size	jump_
protocols::moves::MoverOP	relax_mover_
core::pose::PoseCOP	reference_pose_
core::Real	ref_baseline_
core::scoring::ScoreFunctionOP	scorefxn_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

parent

typedef protocols::filters::Filter protocols::simple_filters::DeltaFilter::parent

private

Constructor & Destructor Documentation

DeltaFilter()

protocols::simple_filters::DeltaFilter::DeltaFilter

(

)

default ctor

~DeltaFilter()

protocols::simple_filters::DeltaFilter::~DeltaFilter ( )

overridedefault

Member Function Documentation

apply()

bool protocols::simple_filters::DeltaFilter::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

References compute(), lower(), range(), and upper().

baseline() [1/2]

core::Real protocols::simple_filters::DeltaFilter::baseline

(

)

const

References baseline_, changing_baseline_, filter_, ref_baseline_, reference_pose_, relax_mover(), core::pose::Pose::size(), protocols::simple_filters::TR(), and unbind().

Referenced by compute(), and parse_my_tag().

baseline() [2/2]

void protocols::simple_filters::DeltaFilter::baseline

(

core::Real const

b

)

References protocols::match::upstream::b, and baseline_.

changing_baseline() [1/2]

bool protocols::simple_filters::DeltaFilter::changing_baseline

(

)

const

References changing_baseline_.

Referenced by parse_my_tag().

changing_baseline() [2/2]

void protocols::simple_filters::DeltaFilter::changing_baseline

(

bool const

c

)

References changing_baseline_.

class_name()

std::string protocols::simple_filters::DeltaFilter::class_name ( )

static

Referenced by protocols::simple_filters::DeltaFilterCreator::keyname(), name(), parse_my_tag(), and provide_xml_schema().

clone()

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

compute()

core::Real protocols::simple_filters::DeltaFilter::compute

(

core::pose::Pose const &

pose

)

const

References baseline(), filter(), report_sm(), protocols::simple_filters::TR(), and unbind().

Referenced by apply(), report(), and report_sm().

filter() [1/2]

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::filter

(

)

const

References filter_.

Referenced by compute(), filter(), and parse_my_tag().

filter() [2/2]

void protocols::simple_filters::DeltaFilter::filter

(

protocols::filters::FilterOP

filter

)

References filter(), and filter_.

fresh_instance()

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

jump() [1/2]

core::Size protocols::simple_filters::DeltaFilter::jump

(

)

const

References jump_.

Referenced by parse_my_tag(), and unbind().

jump() [2/2]

void protocols::simple_filters::DeltaFilter::jump

(

core::Size const

j

)

References jump_.

lower() [1/2]

bool protocols::simple_filters::DeltaFilter::lower

(

)

const

References lower_.

Referenced by apply(), and parse_my_tag().

lower() [2/2]

void protocols::simple_filters::DeltaFilter::lower

(

bool const

l

)

References lower_.

name()

std::string protocols::simple_filters::DeltaFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

parse_my_tag()

void protocols::simple_filters::DeltaFilter::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References baseline(), changing_baseline(), class_name(), filter(), jump(), protocols::rosetta_scripts::legacy_saved_pose_or_input(), lower(), protocols::rosetta_scripts::parse_filter(), protocols::rosetta_scripts::parse_mover(), core::scoring::parse_score_function(), core::import_pose::PDB_file, core::import_pose::pose_from_file(), range(), reference_pose_, relax_mover(), relax_unbound(), core::pose::saved_reference_pose(), scorefxn(), protocols::simple_filters::TR(), unbound(), and upper().

provide_xml_schema()

void protocols::simple_filters::DeltaFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References core::scoring::attributes_for_parse_score_function(), protocols::rosetta_scripts::attributes_for_saved_reference_pose(), class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::simple_filters::DeltaFilterCreator::provide_xml_schema().

range() [1/2]

core::Real protocols::simple_filters::DeltaFilter::range

(

)

const

References range_.

Referenced by apply(), and parse_my_tag().

range() [2/2]

void protocols::simple_filters::DeltaFilter::range

(

core::Real const

r

)

References range_.

ref_baseline()

void protocols::simple_filters::DeltaFilter::ref_baseline

(

core::Real const

rb

)

References ref_baseline_.

relax_mover() [1/2]

protocols::moves::MoverOP protocols::simple_filters::DeltaFilter::relax_mover

(

)

const

References relax_mover_.

Referenced by baseline(), parse_my_tag(), and unbind().

relax_mover() [2/2]

void protocols::simple_filters::DeltaFilter::relax_mover

(

protocols::moves::MoverOP const

mover

)

References relax_mover_.

relax_unbound() [1/2]

bool protocols::simple_filters::DeltaFilter::relax_unbound

(

)

const

References relax_unbound_.

Referenced by parse_my_tag(), and unbind().

relax_unbound() [2/2]

void protocols::simple_filters::DeltaFilter::relax_unbound

(

bool const

u

)

References relax_unbound_, and protocols::hybridization::u.

report()

void protocols::simple_filters::DeltaFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute(), and core::conformation::membrane::out.

report_sm()

core::Real protocols::simple_filters::DeltaFilter::report_sm ( core::pose::Pose const &  ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute(), and unbind().

Referenced by compute().

scorefxn() [1/2]

core::scoring::ScoreFunctionOP protocols::simple_filters::DeltaFilter::scorefxn

(

)

const

References scorefxn_.

Referenced by parse_my_tag().

scorefxn() [2/2]

void protocols::simple_filters::DeltaFilter::scorefxn

(

core::scoring::ScoreFunctionOP

s

)

References scorefxn_.

unbind()

void protocols::simple_filters::DeltaFilter::unbind ( core::pose::Pose &  pose ) const

private

References protocols::rigid::RigidBodyTransMover::apply(), jump(), relax_mover(), relax_unbound(), protocols::rigid::RigidBodyTransMover::step_size(), and unbound().

Referenced by baseline(), compute(), and report_sm().

unbound() [1/2]

bool protocols::simple_filters::DeltaFilter::unbound

(

)

const

References unbound_.

Referenced by parse_my_tag(), and unbind().

unbound() [2/2]

void protocols::simple_filters::DeltaFilter::unbound

(

bool const

u

)

References protocols::hybridization::u, and unbound_.

upper() [1/2]

bool protocols::simple_filters::DeltaFilter::upper

(

)

const

References upper_.

Referenced by apply(), and parse_my_tag().

upper() [2/2]

void protocols::simple_filters::DeltaFilter::upper

(

bool const

u

)

References protocols::hybridization::u, and upper_.

Member Data Documentation

baseline_

core::Real protocols::simple_filters::DeltaFilter::baseline_

private

Referenced by baseline().

changing_baseline_

bool protocols::simple_filters::DeltaFilter::changing_baseline_

private

Referenced by baseline(), and changing_baseline().

filter_

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::filter_

private

Referenced by baseline(), and filter().

jump_

core::Size protocols::simple_filters::DeltaFilter::jump_

private

Referenced by jump().

lower_

bool protocols::simple_filters::DeltaFilter::lower_

private

Referenced by lower().

range_

core::Real protocols::simple_filters::DeltaFilter::range_

private

Referenced by range().

ref_baseline_

core::Real protocols::simple_filters::DeltaFilter::ref_baseline_

mutableprivate

Referenced by baseline(), and ref_baseline().

reference_pose_

core::pose::PoseCOP protocols::simple_filters::DeltaFilter::reference_pose_

private

Referenced by baseline(), and parse_my_tag().

relax_mover_

protocols::moves::MoverOP protocols::simple_filters::DeltaFilter::relax_mover_

private

Referenced by relax_mover().

relax_unbound_

bool protocols::simple_filters::DeltaFilter::relax_unbound_

private

Referenced by relax_unbound().

scorefxn_

core::scoring::ScoreFunctionOP protocols::simple_filters::DeltaFilter::scorefxn_

private

Referenced by scorefxn().

unbound_

bool protocols::simple_filters::DeltaFilter::unbound_

private

Referenced by unbound().

upper_

bool protocols::simple_filters::DeltaFilter::upper_

private

Referenced by upper().

---

The documentation for this class was generated from the following files:

• src/protocols/simple_filters/DeltaFilter.hh
• src/protocols/simple_filters/DeltaFilter.cc