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SampleRotamersFromPDB.cc File Reference

Given source PDBs limits the rotamer sampling to those found in equivalent positions in the PDB At initialization the taskoperation reads a database with allowed rotamers for each position and changes the Rotmer set accordingly. More...

#include <core/pose/extra_pose_info_util.hh>
#include <protocols/splice/SampleRotamersFromPDB.hh>
#include <protocols/splice/SampleRotamersFromPDBCreator.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pack/rotamer_set/RotamerSet_.hh>
#include <core/pack/rotamer_set/RotamerSetOperation.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/operation/TaskOperation.hh>
#include <utility/tag/Tag.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <core/pose/PDBInfo.hh>
#include <sstream>
#include <string>
#include <fstream>
#include <stdlib.h>
#include <map>
#include <core/conformation/ResidueFactory.hh>
#include <core/pack/rotamer_set/RotamerSet.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/splice/util.hh>
#include <protocols/jd2/InnerJob.hh>
#include <protocols/jd2/util.hh>
#include <core/pack/dunbrack/RotamerConstraint.hh>
#include <core/import_pose/import_pose.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/PoseResidueTypeSet.hh>
#include <boost/algorithm/string.hpp>
#include <utility/io/izstream.hh>
#include <core/pack/task/operation/task_op_schemas.hh>
#include <utility/tag/XMLSchemaGeneration.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::splice
 

Typedefs

typedef utility::vector1
< utility::vector1
< core::conformation::ResidueOP > > 
protocols::splice::res_matrix
 

Functions

static basic::Tracer protocols::splice::TR ("core.pack.rotamer_set.SampleRotamersFromPDB_RotamerSetOperation")
 
void protocols::splice::printChi (core::conformation::Residue const res)
 
bool protocols::splice::is_identical_rotamer (ROT const existing_res, ROT const new_res)
 
std::string protocols::splice::Srfp_complex_type_name_for_subsubtag (std::string const &foo)
 
std::string protocols::splice::Srfp_complex_type_name_for_subtag (std::string const &foo)
 

Detailed Description

Given source PDBs limits the rotamer sampling to those found in equivalent positions in the PDB At initialization the taskoperation reads a database with allowed rotamers for each position and changes the Rotmer set accordingly.

Author
Gideon Lapidoth ( glapi.nosp@m.doth.nosp@m.@gmai.nosp@m.l.co.nosp@m.m )