Rosetta  2020.37
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Public Types | Public Member Functions | Static Public Member Functions | Private Attributes | List of all members
protocols::fldsgn::filters::SecondaryStructureCountFilter Class Reference

#include <SecondaryStructureCountFilter.hh>

Inheritance diagram for protocols::fldsgn::filters::SecondaryStructureCountFilter:
Inheritance graph
[legend]

Public Types

typedef protocols::filters::Filter Filter
 
typedef std::string String
 
typedef
protocols::filters::FilterOP 
FilterOP
 
typedef core::pose::Pose Pose
 
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 

Public Member Functions

 SecondaryStructureCountFilter ()
 
 ~SecondaryStructureCountFilter () override
 
FilterOP clone () const override
 
FilterOP fresh_instance () const override
 
void parse_my_tag (TagCOP tag, basic::datacache::DataMap &) override
 parse xml More...
 
bool apply (Pose const &pose) const override
 Returns true if the given pose passes the filter, false otherwise. More...
 
core::Real report_sm (Pose const &pose) const override
 used to report filter internals through a score or silent file More...
 
void report (std::ostream &out, Pose const &pose) const override
 
core::Size compute (Pose const &pose) const
 
std::string name () const override
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
 ~Filter () override
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Attributes

core::Size num_helix_pose_
 
core::Size num_sheet_pose_
 
core::Size num_loop_pose_
 
core::Size num_helix_
 
core::Size num_sheet_
 
core::Size num_loop_
 
core::Size num_helix_sheet_
 
core::Size min_helix_length_
 
core::Size max_helix_length_
 
core::Size min_sheet_length_
 
core::Size max_sheet_length_
 
core::Size min_loop_length_
 
core::Size max_loop_length_
 
bool filter_helix_
 
bool filter_sheet_
 
bool filter_loop_
 
bool filter_helix_sheet_
 
bool return_total_
 
core::Size min_element_resis_
 
core::select::residue_selector::ResidueSelectorCOP selector_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::fldsgn::filters::SecondaryStructureCountFilter::SecondaryStructureCountFilter ( )
protocols::fldsgn::filters::SecondaryStructureCountFilter::~SecondaryStructureCountFilter ( )
inlineoverride

Member Function Documentation

bool protocols::fldsgn::filters::SecondaryStructureCountFilter::apply ( Pose const &  pose) const
overridevirtual
std::string protocols::fldsgn::filters::SecondaryStructureCountFilter::class_name ( )
static
FilterOP protocols::fldsgn::filters::SecondaryStructureCountFilter::clone ( ) const
inlineoverridevirtual
core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::compute ( Pose const &  pose) const
FilterOP protocols::fldsgn::filters::SecondaryStructureCountFilter::fresh_instance ( ) const
inlineoverridevirtual
std::string protocols::fldsgn::filters::SecondaryStructureCountFilter::name ( ) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::fldsgn::filters::SecondaryStructureCountFilter::parse_my_tag ( TagCOP  tag,
basic::datacache::DataMap &  data 
)
overridevirtual
void protocols::fldsgn::filters::SecondaryStructureCountFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::fldsgn::filters::SecondaryStructureCountFilter::report ( std::ostream &  out,
Pose const &  pose 
) const
overridevirtual
core::Real protocols::fldsgn::filters::SecondaryStructureCountFilter::report_sm ( Pose const &  ) const
overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

bool protocols::fldsgn::filters::SecondaryStructureCountFilter::filter_helix_
private

Referenced by apply(), compute(), and parse_my_tag().

bool protocols::fldsgn::filters::SecondaryStructureCountFilter::filter_helix_sheet_
private

Referenced by apply(), compute(), and parse_my_tag().

bool protocols::fldsgn::filters::SecondaryStructureCountFilter::filter_loop_
private

Referenced by apply(), compute(), and parse_my_tag().

bool protocols::fldsgn::filters::SecondaryStructureCountFilter::filter_sheet_
private

Referenced by apply(), compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::max_helix_length_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::max_loop_length_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::max_sheet_length_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::min_element_resis_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::min_helix_length_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::min_loop_length_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::min_sheet_length_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_helix_
private

Referenced by apply(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_helix_pose_
mutableprivate

Referenced by apply(), compute(), and report().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_helix_sheet_
private

Referenced by apply(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_loop_
private

Referenced by apply(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_loop_pose_
mutableprivate

Referenced by apply(), compute(), and report().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_sheet_
private

Referenced by apply(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_sheet_pose_
mutableprivate

Referenced by apply(), compute(), and report().

bool protocols::fldsgn::filters::SecondaryStructureCountFilter::return_total_
private

Referenced by compute(), and parse_my_tag().

core::select::residue_selector::ResidueSelectorCOP protocols::fldsgn::filters::SecondaryStructureCountFilter::selector_
private

Referenced by compute(), and parse_my_tag().


The documentation for this class was generated from the following files: