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protocols::denovo_design::architects::HelixArchitect Class Reference

Architect for helices. More...

#include <HelixArchitect.hh>

Inheritance diagram for protocols::denovo_design::architects::HelixArchitect:
Inheritance graph
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Public Member Functions

 HelixArchitect (std::string const &id_value)
 
 ~HelixArchitect () override
 
std::string type () const override
 simply returns the name of this type of architect More...
 
DeNovoArchitectOP clone () const override
 
StructureDataOP design (core::pose::Pose const &pose, core::Real &random) const override
 
void set_lengths (std::string const &lengths_str)
 
void set_lengths (Lengths const &lengths)
 
components::SegmentCOPs const & motifs () const
 Returns the list of allowed segments; One of these will be chosen during design. More...
 
components::SegmentCOPs::const_iterator motifs_begin () const
 
components::SegmentCOPs::const_iterator motifs_end () const
 
- Public Member Functions inherited from protocols::denovo_design::architects::DeNovoArchitect
 DeNovoArchitect (std::string const &id)
 
 ~DeNovoArchitect () override
 
components::StructureDataOP apply (core::pose::Pose const &pose) const
 
- Public Member Functions inherited from protocols::denovo_design::architects::StructureArchitect
 StructureArchitect (std::string const &id)
 
 ~StructureArchitect () override
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data)
 
std::string const & id () const
 
void set_id (std::string const &new_id)
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 
- Static Public Member Functions inherited from protocols::denovo_design::architects::DeNovoArchitect
static void add_common_denovo_architect_attributes (utility::tag::AttributeList &attlist)
 
- Static Public Member Functions inherited from protocols::denovo_design::architects::StructureArchitect
static void attributes_for_parse_my_tag (utility::tag::AttributeList &attlist)
 

Protected Member Functions

void parse_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data) override
 Configuration by XML. More...
 

Private Attributes

components::SegmentCOPs motifs_
 
Lengths lengths_
 

Additional Inherited Members

- Public Types inherited from protocols::denovo_design::architects::DeNovoArchitect
typedef components::StructureDataOP StructureDataOP
 
- Static Public Attributes inherited from protocols::denovo_design::architects::DeNovoArchitect
static std::string const DATA_MAP_NAME = "DeNovoArchitects"
 

Detailed Description

Architect for helices.

Constructor & Destructor Documentation

protocols::denovo_design::architects::HelixArchitect::HelixArchitect ( std::string const &  id_value)
protocols::denovo_design::architects::HelixArchitect::~HelixArchitect ( )
overridedefault

Member Function Documentation

static std::string protocols::denovo_design::architects::HelixArchitect::class_name ( )
inlinestatic
DeNovoArchitectOP protocols::denovo_design::architects::HelixArchitect::clone ( ) const
overridevirtual
DeNovoArchitect::StructureDataOP protocols::denovo_design::architects::HelixArchitect::design ( core::pose::Pose const &  pose,
core::Real random 
) const
overridevirtual
components::SegmentCOPs const & protocols::denovo_design::architects::HelixArchitect::motifs ( ) const

Returns the list of allowed segments; One of these will be chosen during design.

References motifs_.

components::SegmentCOPs::const_iterator protocols::denovo_design::architects::HelixArchitect::motifs_begin ( ) const

References motifs_.

components::SegmentCOPs::const_iterator protocols::denovo_design::architects::HelixArchitect::motifs_end ( ) const

References motifs_.

void protocols::denovo_design::architects::HelixArchitect::parse_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap &  data 
)
overrideprotectedvirtual

Configuration by XML.

Implements protocols::denovo_design::architects::DeNovoArchitect.

References set_lengths().

void protocols::denovo_design::architects::HelixArchitect::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::denovo_design::architects::HelixArchitect::set_lengths ( std::string const &  lengths_str)

Referenced by parse_tag().

void protocols::denovo_design::architects::HelixArchitect::set_lengths ( Lengths const &  lengths)
std::string protocols::denovo_design::architects::HelixArchitect::type ( ) const
overridevirtual

simply returns the name of this type of architect

Implements protocols::denovo_design::architects::DeNovoArchitect.

References class_name().

Referenced by design().

Member Data Documentation

Lengths protocols::denovo_design::architects::HelixArchitect::lengths_
private

Referenced by set_lengths().

components::SegmentCOPs protocols::denovo_design::architects::HelixArchitect::motifs_
private

The documentation for this class was generated from the following files: