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Namespaces | Functions
ScoreFunction.cc File Reference

Atom pair energy functions. More...

#include <core/scoring/ScoreFunction.hh>
#include <algorithm>
#include <string>
#include <sstream>
#include <vector>
#include <istream>
#include <boost/algorithm/string/join.hpp>
#include <boost/format.hpp>
#include <core/scoring/Energies.hh>
#include <core/scoring/EnergiesCacheableDataType.hh>
#include <core/scoring/EnergyGraph.hh>
#include <core/scoring/LREnergyContainer.hh>
#include <core/scoring/MinimizationGraph.hh>
#include <core/scoring/ScoreFunctionInfo.hh>
#include <core/scoring/ScoreTypeManager.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/constraints/Constraint.hh>
#include <core/scoring/hbonds/HBondOptions.hh>
#include <core/scoring/hbonds/HBondSet.hh>
#include <core/scoring/hbonds/hbonds.hh>
#include <core/scoring/methods/ContextDependentLRTwoBodyEnergy.hh>
#include <core/scoring/methods/ContextDependentOneBodyEnergy.hh>
#include <core/scoring/methods/ContextDependentTwoBodyEnergy.hh>
#include <core/scoring/methods/ContextIndependentLRTwoBodyEnergy.hh>
#include <core/scoring/methods/ContextIndependentOneBodyEnergy.hh>
#include <core/scoring/methods/ContextIndependentTwoBodyEnergy.hh>
#include <core/scoring/methods/EnergyMethod.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/methods/FreeDOF_Options.hh>
#include <core/scoring/methods/TwoBodyEnergy.hh>
#include <core/scoring/methods/WholeStructureEnergy.hh>
#include <core/scoring/mm/MMBondAngleResidueTypeParam.hh>
#include <core/scoring/mm/MMBondAngleResidueTypeParamSet.hh>
#include <core/scoring/rna/RNA_EnergyMethodOptions.hh>
#include <core/scoring/symmetry/SymmetricEnergies.hh>
#include <core/kinematics/MinimizerMapBase.hh>
#include <core/id/DOF_ID.hh>
#include <core/id/TorsionID.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <core/pose/symmetry/util.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/EnvPairPotential.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <basic/database/open.hh>
#include <basic/citation_manager/CitationCollection.hh>
#include <basic/citation_manager/UnpublishedModuleInfo.hh>
#include <numeric/random/DistributionSampler.hh>
#include <utility/io/izstream.hh>
#include <utility/io/GeneralFileManager.hh>
#include <utility/options/OptionCollection.hh>
#include <utility/options/keys/OptionKeyList.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/format.hh>

Namespaces

 core
 A class for reading in the atom type properties.
 
 core::scoring
 

Functions

static basic::Tracer tr ("core.scoring.ScoreFunction")
 Basic headers. More...
 
void core::scoring::show_detail (std::ostream &out, EnergyMap &energies, EnergyMap weights)
 
template<class T >
void core::scoring::vector1_remove (utility::vector1< T > &v, T const &t)
 private – handles setting the derived data More...
 
std::string core::scoring::find_weights_file (std::string const &name, std::string const &extension)
 Utility function to locate a weights or patch file, either with a fully qualified path, in the local directory, or in the database. Names may be passed either with or without the optional extension. More...
 

Detailed Description

Atom pair energy functions.

ScoreFunction class definition. A easy way to deal with the low-res score function problem in replica docking.

ScoreFunction class definition.

Author
Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)
Kevin P. Hinshaw (Kevin.nosp@m.Hins.nosp@m.haw@g.nosp@m.mail.nosp@m..com)
Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)
Kevin P. Hinshaw (Kevin.nosp@m.Hins.nosp@m.haw@g.nosp@m.mail.nosp@m..com)
Modified by Sergey Lyskov
Zhe Zhang

Function Documentation

static basic::Tracer tr ( "core.scoring.ScoreFunction"  )
static

Basic headers.